1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agtatcatagtaatcaatgctcatcagcttttattggtgttgcattacaacatacttggtcatgcttacactttctaatcgtacatgtttctgtacgcagAGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATCCACAAATTATTAAGAGAATATGGCTCTTTTAAGGAACCTGTGATTCGTA
species | Zea mays |
transcript | GRMZM2G140726_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAGACAACTCTCCCACCCAAACATAGTGCAGTACCATGGAAGTGAGCTG AGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATCEST: gi|67025018|gb|CO453767.1|CO453767
genomic: TTAGACAACTCTCCCACCCAAACATAGTGCAGTACCATGGAAGTGAGCTGgcaagttcta ... ctgtacgcagAGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATC
EST: TTAGACAACTCTCCCACCCAAACATAGTGCAGTACCATGGAAGTGAGCTG AGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATC
genomic: TTAGACAACTCTCCCACCCAAACATAGTGCAGTACCATGGAAGTGAGCTGgcaagttcta ... ctgtacgcagAGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATC
tacaacatacttggtcatgcttacactttctaatcgtacatgtttctgtacgcagAGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATCCACAAATTATTAAGAGAATATGGCTCTTTTAAGGAACCTGTGATTCGTA
ttctaat putative branch site (score: 51)
tgtttct putative PPT
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtatcatagtaatcaatgctcatcagcttttattggtgttgcattacaacatacttggtcatgcttacactttctaatcgtacatgtttctgtacgcagAGTGATGAATCACTTTCCATTTGTCTTGAGTATGTTTCGGGGGGTTCAATCCACAAATTATTAAGAGAATATGGCTCTTTTAAGGAACCTGTGATTCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - caatgct
- - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacatg