1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcattgtttataaattttaataattttacttttcatcgctcttttattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
species | Zea mays |
transcript | GRMZM2G139683_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|71765862|gb|DR963799.1|DR963799
genomic: AAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|28910217|gb|CB331329.1|CB331329
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|26559121|gb|CA831356.1|CA831356
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|93016786|gb|EB642306.1|EB642306
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: CCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|94479606|gb|EB708564.1|EB708564
genomic: CCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|93016785|gb|EB642305.1|EB642305
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: CCAACAAACAAG GAGCTTGGTCATAGGCAGCAATATTTCTTCTGGAAAAAATACAGGAATAACEST: gi|87157028|gb|DY401817.1|DY401817
genomic: CCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|22521504|gb|BU080315.1|BU080315
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|32837416|gb|CD977094.1|CD977094
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|60352751|gb|DN219724.1|DN219724
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|5901084|gb|AW042184.1|AW042184
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
tattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
aactaat putative branch site (score: 2)
tatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattgtttataaattttaataattttacttttcatcgctcttttattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC