1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcattgtttataaattttaataattttacttttcatcgctcttttattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
species | Zea mays |
transcript | GRMZM2G139683_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|28910217|gb|CB331329.1|CB331329
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|26559121|gb|CA831356.1|CA831356
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|87157028|gb|DY401817.1|DY401817
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|22521504|gb|BU080315.1|BU080315
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACEST: gi|60352751|gb|DN219724.1|DN219724
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
EST: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAG GAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
genomic: TTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatctttt ... tgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAAC
tattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
aactaat putative branch site (score: 2)
tatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattgtttataaattttaataattttacttttcatcgctcttttattaattaagactatttgtaagaaactgacacctaccaactaattgtttgacagGAGCTTGCTCATAGGCAGCAATATTTCTTCTGGAAAAACTACAGGAATAACAGACTGAAGCACATCATACCGCGCCCTCCTCCTGAACCTGCACCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC