1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggatatctaatttagatcgaccgtaacatgggaccttagcttccagctctgcaaacctctgcaatttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTG
species | Zea mays |
transcript | GRMZM2G139643_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|76014054|gb|DT941224.1|DT941224
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|71417068|gb|DR803915.1|DR803915
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|30088355|gb|CB886560.1|CB886560
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|211508855|gb|FL158319.1|FL158319
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACAAGGTTTTTGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCEST: gi|76282448|gb|DV022016.1|DV022016
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTC
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|71768840|gb|DR966777.1|DR966777
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACTAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCEST: gi|71446122|gb|DR827172.1|DR827172
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
caatttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTG
agttgac putative branch site (score: 4)
cttcttgttt putative PPT
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggatatctaatttagatcgaccgtaacatgggaccttagcttccagctctgcaaacctctgcaatttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA