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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagatgactctctttgatgatgaggggaaaacttctttgatttaggtggacaaattgtacctcttgctaacctgttatatattccctttgatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA

Basic information

species Zea mays
transcript GRMZM2G139533_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32910772|gb|CF015584.1|CF015584
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211134391|gb|FL235008.1|FL235008
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGA
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGA
EST: gi|211541114|gb|FL234981.1|FL234981
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTC-AAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|89250566|gb|DY622352.1|DY622352
EST:     GGTATCAAAAGGCAGCTGATACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGGAGGCCGCAGAGACGATGCTTTGTTGATGATGTGGCAGATA
genomic: GGTATCAAA-GGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTG-AGGCCGCAGAGACGATGCTT-GTTGATGATGTGGCAGATA
EST: gi|211134383|gb|FL235000.1|FL235000
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCCGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|78084278|gb|DV512671.1|DV512671
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133443|gb|FL234988.1|FL234988
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|78116800|gb|DV535187.1|DV535187
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133448|gb|FL234993.1|FL234993
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|37398320|gb|CF636472.1|CF636472
EST:     ACTGCAAAAGATCCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: ACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|88752183|gb|DY536324.1|DY536324
EST:     TGGTATCAAAGGCAGCTGATACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|74244684|gb|DT652598.1|DT652598
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|71435544|gb|DR816594.1|DR816594
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133451|gb|FL234996.1|FL234996
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211134389|gb|FL235006.1|FL235006
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCMGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|78091338|gb|DV519712.1|DV519712
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133445|gb|FL234990.1|FL234990
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|76921923|gb|DV168769.1|DV168769
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|76285911|gb|DV025479.1|DV025479
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133440|gb|FL234985.1|FL234985
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAN                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|213191131|gb|FM184996.1|FM184996
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|88756113|gb|DY540254.1|DY540254
EST:     TGGTATCAGAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|74242198|gb|DT650112.1|DT650112
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|60347352|gb|DN214325.1|DN214325
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|12046458|gb|BF728597.1|BF728597
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGCTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133442|gb|FL234987.1|FL234987
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|71767215|gb|DR965152.1|DR965152
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|78180978|gb|DV551351.1|DV551351
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|74233420|gb|DT641334.1|DT641334
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211133447|gb|FL234992.1|FL234992
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTNGTTGATGATGTGGCAGATAA
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTT-GTTGATGATGTGGCAGATAA
EST: gi|211133439|gb|FL234984.1|FL234984
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGAT-CCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|32855368|gb|CD995049.1|CD995049
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|88756070|gb|DY540211.1|DY540211
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|71445095|gb|DR826145.1|DR826145
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|32866511|gb|CF006193.1|CF006193
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|71427098|gb|DR808148.1|DR808148
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|32856195|gb|CD995876.1|CD995876
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: gi|211134392|gb|FL235009.1|FL235009
EST:     TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG                         GTCTACATTGAGGCCGCAGARACGATGCTTGTTGATGATGTGGCCGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 83

CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 184

CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 214

CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 113

CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggacaaattgtacctcttgctaacctgttatatattccctttgatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA
                                     ttccctttg  CT-rich tract
                            tgttatatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagatgactctctttgatgatgaggggaaaacttctttgatttaggtggacaaattgtacctcttgctaacctgttatatattccctttgatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATAAAGCTATTGGCTCACATGGAGCTGTATTTCTTCAAAGGCAGCTTGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT