1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
species | Zea mays |
transcript | GRMZM2G138268_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|37386269|gb|CF630321.1|CF630321
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: GAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|32929462|gb|CF034274.1|CF034274
genomic: GAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAGGAACAGAAGCTGAGGAGAAGACGGACEST: gi|8102585|gb|AW927285.1|AW927285
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: CCATTGGCCTGG CGCCAAGGGCCATGGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAEST: gi|78180728|gb|DV551101.1|DV551101
genomic: CCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGG-AGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGA
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|32829307|gb|CD968985.1|CD968985
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|32829634|gb|CD969312.1|CD969312
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCG-CTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|32830201|gb|CD969879.1|CD969879
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|44901509|gb|CK828054.1|CK828054
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACEST: gi|88753298|gb|DY537439.1|DY537439
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CACCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACCGACEST: gi|4681090|gb|AI629760.1|AI629760
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
EST: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG CGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
genomic: ATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgac ... aattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGAC
tagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
ttttcc CT-rich tract
tgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccagCGCCAAGGGCCATGGAGAAATGCAAGAACAGAAGCTGAGGAGAAGACGGACGGACGGAAGCTTGCATCTCAGCACCACCAGGGGTGGATGGATGCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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