1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagggtagtattttggactttttcctttcgaatatagccttgttttgttctgatggaatctgaccagattcagcgtagaaattccttgactaaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTATTACCAAAGGGAAGCGGCGGCTCTGTCTAATCACTGGTGCACAAGAACT
species | Zea mays |
transcript | GRMZM2G137968_T02 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATT TTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTAEST: gi|22489351|gb|BU049274.1|BU049274
genomic: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATTgtatccatga ... taaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTA
EST: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATT TTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTAEST: gi|71766540|gb|DR964477.1|DR964477
genomic: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATTgtatccatga ... taaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTA
EST: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATT TTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTA
genomic: AACGGCACAGGCTCTGCAAAACCTTCCATTAGGATCTGCCCCTGGTGATTgtatccatga ... taaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTA
tgttctgatggaatctgaccagattcagcgtagaaattccttgactaaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTATTACCAAAGGGAAGCGGCGGCTCTGTCTAATCACTGGTGCACAAGAACT
ttccttgac putative branch site
tagaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagggtagtattttggactttttcctttcgaatatagccttgttttgttctgatggaatctgaccagattcagcgtagaaattccttgactaaagcaaagTTCTGGATTCTATTGTTGTTGGCTTGGATATGGTGATTAGGAAATTTGGTATTACCAAAGGGAAGCGGCGGCTCTGTCTAATCACTGGTGCACAAGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC