1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttaattatttcacagcttatgagttatgatgtgcacatctatatgttttcagtacttatagtgatatgcatgattgctactatattacttgtataggaatgtttatgcgctttgcagtttgaaccttatacatttttgttggtgctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTGAGGACTCAAA
species | Zea mays |
transcript | GRMZM2G137479_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAA AAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTEST: gi|9952957|gb|BE639540.1|BE639540
genomic: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAAgtaagttaat ... ctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTT
EST: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAA AAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTEST: gi|211312062|gb|FL442680.1|FL442680
genomic: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAAgtaagttaat ... ctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTT
EST: ATATAGTCGATAGCTCCTCGACCACTGGTGATACTGGTGCCAGTAAGAAA AAGACTGAAAAGAGCAGTTTCCGCCCAEST: gi|211510021|gb|FL440680.1|FL440680
genomic: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAAgtaagttaat ... ctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCA
EST: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAA AAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTEST: gi|4609860|gb|AI600699.1|AI600699
genomic: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAAgtaagttaat ... ctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTT
EST: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAA AAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTT
genomic: ATATAGTTGATAGCTCTTCGAGCAATGGTGATACTGGTGCCAGTAAGAAAgtaagttaat ... ctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTT
tgtttatgcgctttgcagtttgaaccttatacatttttgttggtgctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTGAGGACTCAAA
ctttcatt CT-rich tract
ttatacatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaattatttcacagcttatgagttatgatgtgcacatctatatgttttcagtacttatagtgatatgcatgattgctactatattacttgtataggaatgtttatgcgctttgcagtttgaaccttatacatttttgttggtgctttcattagAAGACTGAAAAGAGCAGTTTCCGCCCAATTGCCAAGGAGAGCCTGTCACTTGAGGACTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA