1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatgatgaatttgttgatattcaagttttgaattttagttcttatttttctcgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGCAGATATCTGAGTTGAAGGAGGAGATTCATAGAACTAGGGATGAACAGC
species | Zea mays |
transcript | GRMZM2G136178_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAG GAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGEST: gi|60396244|gb|DN229113.1|DN229113
genomic: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAGgtaaatgatg ... cgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
EST: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAG GAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGEST: gi|67030328|gb|CO459077.1|CO459077
genomic: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAGgtaaatgatg ... cgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
EST: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAG GAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGEST: gi|116824035|gb|EC867618.1|EC867618
genomic: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAGgtaaatgatg ... cgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
EST: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAG GAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGEST: gi|74052546|gb|DN591141.1|DN591141
genomic: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAGgtaaatgatg ... cgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
EST: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAG GAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
genomic: CAAACAATGGAGGAAAACCATTTACAGATCAAATGTTCACTCGCATCAAGgtaaatgatg ... cgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAG
gaatttgttgatattcaagttttgaattttagttcttatttttctcgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGCAGATATCTGAGTTGAAGGAGGAGATTCATAGAACTAGGGATGAACAGC
tgttgat putative branch site (score: 4)
ttcttatttttctcgt putative PPT
aagttttgaattttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgatgaatttgttgatattcaagttttgaattttagttcttatttttctcgttgtgtagGAGGTGCATGATAGGGAAAAAGAGGTGCATACCTTGGGATATTCAGATGAGCAGATATCTGAGTTGAAGGAGGAGATTCATAGAACTAGGGATGAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT