1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctttatgagtgggagtgtgggattattgtgtgcgcacttgtccttgtaaccttgcacccacgtattgttgtgcaacttctcatttctttcatctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTTCCATGCCATCATGAATTCCATCTAACATGTGTAGACAAATGGCTAAAG
species | Zea mays |
transcript | GRMZM2G135909_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAGTGTATAGGAAACCATTGAAATCCCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|29544679|gb|CB605059.1|CB605059
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|148944810|gb|EC889955.2|EC889955
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|211345318|gb|FL467154.1|FL467154
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: CCATTGAAATACCAGAGCGAGGAAGCAGCMCA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|148973008|gb|EE024057.2|EE024057
genomic: CCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|60341193|gb|DN208166.1|DN208166
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTEST: gi|101385354|gb|EB814723.1|EB814723
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
EST: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACA ATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
genomic: TCAAAAGTGTATAGGAAACCATTGAAATACCAGAGCGAGGAAGCAGCACAgtaagacatt ... atctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACT
gtaaccttgcacccacgtattgttgtgcaacttctcatttctttcatctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTTCCATGCCATCATGAATTCCATCTAACATGTGTAGACAAATGGCTAAAG
ttgtaac putative branch site (score: 25)
cttctcatttctttca putative PPT
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatgagtgggagtgtgggattattgtgtgcgcacttgtccttgtaaccttgcacccacgtattgttgtgcaacttctcatttctttcatctttgcagATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGATTGCCTCCGTATACTTCCATGCCATCATGAATTCCATCTAACATGTGTAGACAAATGGCTAAAG
- - - - - - - - - - - - - - - - -gcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - cttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt