1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtttatctttcatgatctggaaatcaatcaacaccactattcaaaccttaataaaccaatgtgactgtatgtttgatcttttttgtgttctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTGGTAGAGAATGTTCATGTCTGGGATTCACGGCGAGGCGTGAGGATAAAG
species | Zea mays |
transcript | GRMZM2G135763_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAG TGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTEST: gi|19058358|gb|BM737025.1|BM737025
genomic: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAGgtaagatatt ... ctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTT
EST: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAG TGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTEST: gi|22490805|gb|BU050728.1|BU050728
genomic: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAGgtaagatatt ... ctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTT
EST: AATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAG TGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTEST: gi|31355354|gb|CD439711.1|CD439711
genomic: AATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAGgtaagatatt ... ctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTT
EST: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAG TGCTGGAGTATCGATTGGAAGTGAGATGTCTGGTGGTGTCTCGGATGTTTT
genomic: CCATCAGCTAATATTACTATCCAGAATGTCGTAATCCGCTCTATGGTCAGgtaagatatt ... ctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTT
accttaataaaccaatgtgactgtatgtttgatcttttttgtgttctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTGGTAGAGAATGTTCATGTCTGGGATTCACGGCGAGGCGTGAGGATAAAG
tcttttttgtgttct CT-rich tract
atctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttatctttcatgatctggaaatcaatcaacaccactattcaaaccttaataaaccaatgtgactgtatgtttgatcttttttgtgttctgtgggcagTGCTGGAGTATCGATTGGAAGCGAGATGTCTGGTGGTGTCTCGGATGTTTTGGTAGAGAATGTTCATGTCTGGGATTCACGGCGAGGCGTGAGGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - -catgatc
- - - - - - - - - - gaaatcaa
- - - - - - - - - - - - - - - - caccact
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg