1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacttctttttcgctgaattgagaatgtcagttatgaaacctgttctcatttgaaactttgatgttgatgtagcacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCAT
species | Zea mays |
transcript | GRMZM2G135568_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAEST: gi|149061138|gb|EE157398.2|EE157398
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAEST: gi|211036134|gb|FL002061.1|FL002061
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAA-TATTTCTTCTTTTAGATGCCACGCAAEST: gi|149061139|gb|EE157399.2|EE157399
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAEST: gi|149083911|gb|EE173287.2|EE173287
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAEST: gi|149083910|gb|EE173286.2|EE173286
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAEST: gi|71757754|gb|DR955691.1|DR955691
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
EST: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGNNNNNN NCGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
genomic: TTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAAgtaacttctt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAA
aacctgttctcatttgaaactttgatgttgatgtagcacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCAT
tgttgat putative branch site (score: 4)
ctatctt putative PPT
atttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttctttttcgctgaattgagaatgtcagttatgaaacctgttctcatttgaaactttgatgttgatgtagcacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG