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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG

Basic information

species Zea mays
transcript GRMZM2G135283_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g52840.1 (Oryza sativa), 3'ss of exon 4
gtactgccc----tgctctatcggttgtcattctcgtgattgtttcagtgg-aaacacgcgt---------gcaaattgagtgactg-tctgggtgaataatctgaattggggtttttattctgtgtgttc-ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
|||| |        | ||||||||||| | || |   |||| |||  |||  ||| | |  |         |  || | |||| ||| |  | |||||| || ||||||   | |     |||| || ||| |||   |||| |  ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||
gtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagtgcctgatgggagtgaatgatgtgaatttctggtg--gctctgggttttccttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 4
gtactgc----cctgctctatcggttgtcattctcgtgattgtttcagtgg-aaacacgcgt---------gcaaattgagtgactg-tctgggtgaataatctgaattggggtttttattctgtgtgttc-ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
|||| |        | ||||||||||| | || |   |||| |||  |||  ||| | |  |         |  || | |||| ||| |  | |||||| || ||||||   | |     |||| || ||| |||   |||| |  ||||||||||| ||||| ||||| |||||||||||||                                    
gtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagTGCCTGATGGGAGTGAATGATGTGAATTTCTGGTG--GCTCTGGGTTTTCCTTGCGTGCAGATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTT------------------------------------

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-----attggggtttttattctgtgtgttcttgg-tcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
                                            ||| |       | ||  |||  |  || || |  | |  | |    |   | |    ||  |  ||||    |     || ||   |||      | ||  ||    |   ||     | ||   |   ||||  || || |||||||| |||||||| ||||| ||||||||||| || || || ||||| || || ||||||||||
gtaagaagaagatattaatttccttatcatgcttttcttttatggtatttgtaatgtttactggtcattgttatcatt-tagcattatcatatttatgtagtcagttccagtgttccttcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatcttttagGTACATGGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-----attggggtttttattctgtgtgttcttgg-tcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
                                            ||| |       | ||  |||  |  || || |  | |  | |    |   | |    ||  |  ||||    |     || ||   |||      | ||  ||    |   ||     | ||   |  |||||  ||||| |||||||| |||||||| ||||| ||||||||||| || || || ||||| || || ||||||||||
gtaagaagaagatattaatttccttatcatgcttttcttttatggtatttgtaatgtttactggtcattgttatcatt-tagcattatcatatttatgtagtcagttccagtgttccttcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 4
gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-attggggtttttattctgtgtgttcttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
||||         || ||  ||  | |||     | | | |   |   |  |  | | ||   ||| | ||  | |   |  |||||   | | |   | |  ||||   | |||  ||  |  ||||| |||||| |||||||||||||| |||||||| ||||| || || |||||||  |||||||| || ||||||||||
gtacgaggagctactttcaatttcctttcc----actttgttgctcatattattc-ttcaggatga-tcaccttttattttcataattaaataataaagctaatattggatttgtattt--tttcagGTATATTGACATGGCAGAGTCCTTATGTCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv00s0211g00160.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------------gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-----attggggtttttattctgtgtgttcttgg-tcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
                                                                     ||| |       ||||| |||  |  || || |  | |  | |    |   | |    ||  |  ||||    |     || ||   |||      | ||  ||    |   ||     | ||   |  |||||  ||||| |||||||| |||||||| ||||| ||||||||||| || || || ||||| || || ||||||||||
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtctattggtcattgttatcatt-tagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

upper sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------------gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-----attggggtttttattctgtgtgttcttgg-tcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
                                                                     ||| |       | ||| |||  |  || || |  | |  | |    |   | |    ||  |  ||||    |     || ||   |||      | ||  ||    |   ||     | ||   |  |||||  ||||| |||||||| |||||||| ||||| ||||||||||| || || || ||||| || || ||||||||||
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatt-tagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286152|gb|FL173733.1|FL173733
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|148946029|gb|EC891328.2|EC891328
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211286141|gb|FL173722.1|FL173722
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGGCTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG-CTT
EST: gi|211379736|gb|FL173736.1|FL173736
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATYGATATGGCAGAGTCCTTGTGTCAGAAACGTACTTTGGAGGC
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGC
EST: gi|211379741|gb|FL173741.1|FL173741
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GYTTATYGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGG
EST: gi|21987802|gb|BQ779330.1|BQ779330
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211284346|gb|FL173719.1|FL173719
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTCGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|149078907|gb|EE167727.2|EE167727
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211382375|gb|FL173752.1|FL173752
EST:     AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAG
EST: gi|211379738|gb|FL173738.1|FL173738
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATKGATATGGCARAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211379739|gb|FL173739.1|FL173739
EST:     AACAAGTACAGCGAGGNGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTT-ATTGATATGGCAGA
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGA
EST: gi|211379748|gb|FL173748.1|FL173748
EST:     ACAAGTACAGCTGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAATCCTTGTGT
genomic: ACAAGTACAGC-GAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGT
EST: gi|149012532|gb|EE042603.2|EE042603
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211379749|gb|FL173749.1|FL173749
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAWATGA                         GTTTAT-GATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211286154|gb|FL173735.1|FL173735
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTT-ATTGATATGGCAGAGTCCTTG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTG
EST: gi|211379747|gb|FL173747.1|FL173747
EST:     ACAAGTACAGCGAGGGGTACC-TGGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
genomic: ACAAGTACAGCGAGGGGTACCCTGG-CGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
EST: gi|211379746|gb|FL173746.1|FL173746
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|148969981|gb|EE020895.2|EE020895
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|71299012|gb|DR785498.1|DR785498
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211379743|gb|FL173743.1|FL173743
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGG
EST: gi|211286151|gb|FL173732.1|FL173732
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGGATATGGCAGAGT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTG-ATATGGCAGAGT
EST: gi|211284347|gb|FL173720.1|FL173720
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211286145|gb|FL173726.1|FL173726
EST:     AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGGAGGCTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGG-AGGCTT
EST: gi|148947246|gb|EC892606.2|EC892606
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211382374|gb|FL173751.1|FL173751
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGA
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGA
EST: gi|149081312|gb|EE170425.2|EE170425
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211379744|gb|FL173744.1|FL173744
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTCGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|148945831|gb|EC891120.2|EC891120
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|148973319|gb|EE024404.2|EE024404
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211379737|gb|FL173737.1|FL173737
EST:     AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA                         GTYTAT-GATATGGCAGAGTCCTTGTGTC
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTC
EST: gi|149089957|gb|EE179246.2|EE179246
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: gi|211286140|gb|FL173721.1|FL173721
EST:     AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA                         GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG
                                        tgttctt  CT-rich tract
                           tttttattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG