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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA

Basic information

species Zea mays
transcript GRMZM2G135132_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 4
aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
           |     | |         || | |  |   |  || |||| |||| |||||  || |   ||||| | || | ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| || ||||
----------gtaagctctgaatccactaaaaccatgag--caagagcaacaaaaacctgtatatatacttgtttgcttactgtatgccattgctttgcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGTTGCATTGGAAAGGATAAGTTTGGTGAGGAGATGAAGAAGAATGCCCAAGCTGCTGGTGTTA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 4
aaactgcatcatcgaaacaggccttttataatctactaa-accgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
          || | | |   | | |||     || ||| ||  ||||     |  | || | || | | || |||        | | | |||  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| || ||||| |||||||| || ||||||||||| ||  |  |   ||| || || |
--------gtat-gtatctaccttgttagtgcttagtaatactctgaatctatattagctttggtcaaagcaatttaccctttacttttgctt-cttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G33910.3 (Glycine max), 3'ss of exon 1
aaactgcatcatcgaaacaggccttttataatctactaa-accgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
|| |    |     ||  | || | |       || ||| ||  ||||     |  | || | || | | || |||        | | | |||  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| || ||||| |||||||| || ||||||||||| ||  |      ||| || || |
aatcaaggttgctcaagtatgcatctaccttgttagtaatactctgaatctgtagtagctttggtcaaagcaatttaccctttacttttgctt-cttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G33910.2 (Glycine max), 3'ss of exon 3
aaactgcatcatcgaaacaggccttttataatctactaa-accgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
                  | || | |       || ||| ||  ||||     |  | || | || | | || |||        | | | |||  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| || ||||| |||||||| || ||||||||||| ||  |      ||| || || |
----------------gtatgcatctaccttgttagtaatactctgaatctgtagtagctttggtcaaagcaatttaccctttacttttgctt-cttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G06580.1 (Glycine max), 3'ss of exon 4
aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
                |    | || | | ||   || |  |  ||  |           |   ||    | |    || |  ||  ||  |  |  ||||||||||||||| | || ||||| |||||||| || || ||||| || |||||||| ||||| |||||||||||||| ||   |  |   |  || || |
--------------gtatgcactttcttttataagctgagtctggagtagttgtgttacttgtgta-gctaatcatttgtcttcacttcactcataacagTGGATGCTTCAAGCACCAGGTGCCACAAGTTATATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTAGATGGTGTAA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G20780.1 (Glycine max), 3'ss of exon 4
aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacat---cagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
                |    | || | | || |  |  |   |||      |  |  ||| ||||| |    ||||   |    || |   |||  |   |||||||||||||| | || ||||| ||||||||||| || ||||| || |||||||| ||||| |||||||||||||| ||   |  |  ||  || || |
--------------gtatgcactttcttttatatgttgtaagctgagtctggagtagttgt-gttacttgtgtagttaattatttgccttcacttcataatagTGGATGCTTCAAGCACCAGGTGCCACAAGTTACATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTTGATGGTGTAA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 3'ss of exon 4
--aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
  | |    ||  |    |  |  |||      ||  ||  |   |  | |   | ||| || | | |  |   | | |    | | |||   |||||| ||||||||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||  |  ||  ||| || ||||
gtacataaaatatttactattgagctta-gctttccgctgtattttcta-attaagaaattgcattcattt---tctcaccttgccttgtgtgtgttttgcagTGGATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTA

upper sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 4
aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgac---ggcatgtccttgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
     | | |||  ||      || ||    |   ||      || |    | ||    | | || |||   |||  | ||   | | |||   |||||| ||||||||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||  |  ||  ||| || ||||
-----gta-cataaaatatttactattgagcttagctttcatctgtattttctaattaagaaatttcattcattttctcaccttgccttgtgtgtgttttgcagTGGATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211433554|gb|FL254730.1|FL254730
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433558|gb|FL254734.1|FL254734
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211436159|gb|FL254742.1|FL254742
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430963|gb|FL254725.1|FL254725
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|87155643|gb|DY400432.1|DY400432
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430959|gb|FL254721.1|FL254721
EST:     GAGCCACCCANAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGNGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211535005|gb|FL000874.1|FL000874
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430960|gb|FL254722.1|FL254722
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433562|gb|FL254738.1|FL254738
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430956|gb|FL254718.1|FL254718
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433550|gb|FL254726.1|FL254726
EST:     GAGCCACCCAAAACTCTATCAGGGGTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430955|gb|FL254717.1|FL254717
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|26559465|gb|CA831700.1|CA831700
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|32916313|gb|CF021125.1|CF021125
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433561|gb|FL254737.1|FL254737
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430957|gb|FL254719.1|FL254719
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|22546548|gb|BU098859.1|BU098859
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433560|gb|FL254736.1|FL254736
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211430954|gb|FL254716.1|FL254716
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211433557|gb|FL254733.1|FL254733
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|31353988|gb|CD438345.1|CD438345
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
EST: gi|211538002|gb|FL000876.1|FL000876
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 140

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 118

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 303

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 262

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctt ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA
                          gtttgat  putative branch site (score: 262)
                                          tccttgttttc  putative PPT
       aaaaact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaactgcatcatcgaaacaggccttttataatctactaaaccgtgaacaaccaaaaactgtagttacatcagtttgatgacggcatgtccttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGGAAGGACAAGTTTGGTGAGGAGATGAAGAAAAATGCTCAAGCTGCAGGAGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -ctgcatc
- - - - - - - - -caggcct
- - - - - - - - - - - - - - - - - - - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcatg