1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cctctcaatccatatggattggggtagaaccgaacaagcccttattcttcagattcatactgacaactttctcccctccctattctggtgaaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAATGGGCATTTGCAGAAGTTGAAGGAAATGGATCCCATTGA
species | Zea mays |
transcript | GRMZM2G135052_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAG CCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|60358163|gb|DN225136.1|DN225136
genomic: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAGgtttgtactg ... aaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAG CCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|5361184|gb|AI795604.1|AI795604
genomic: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAGgtttgtactg ... aaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACNCAAG CCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|5847380|gb|AW000459.1|AW000459
genomic: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAGgtttgtactg ... aaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAG CCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|78021481|gb|DV489868.1|DV489868
genomic: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAGgtttgtactg ... aaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
EST: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAG CCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
genomic: TGTAAATAATGCTTTTCCTGTTCAACATTTCAGTCCGAGGCATACACAAGgtttgtactg ... aaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATC
tcttcagattcatactgacaactttctcccctccctattctggtgaaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAATGGGCATTTGCAGAAGTTGAAGGAAATGGATCCCATTGA
tactgac putative branch site (score: 34)
attcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctctcaatccatatggattggggtagaaccgaacaagcccttattcttcagattcatactgacaactttctcccctccctattctggtgaaacatgcagCCATGCCAGACTTTGCTCGTGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAATGGGCATTTGCAGAAGTTGAAGGAAATGGATCCCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -ccatatg
- - - - - - - - - - - - - - - - - caagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catactg