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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgagtttgatattagattacatttcgaaatctccctggttgtgtaaccttgcttctacctacctgcctgacagGGAGTCGTTGCGTCCTGCCTGAACTACGCGATCATGACCTGGGCGAACAAGATCCTCGGGCCGTCTCTGGTCGCCCTCTACAACCCACTCCAACCGGCAT

Basic information

species Zea mays
transcript GRMZM2G134930_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134930_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 3'ss of exon 4
-----------------------------------gtaagtttctgagt--ttgatattagattacatttcgaaatctccctggttgtgtaaccttgct---tctacctacctgcctgac-agGGAGTCGTTGCGTCCTGCCTGAACTACGCGATCATGACCTGGGCGAACAAGATCCTCGGGCCGTCTCTGGTCGCCCTCTACAACCCACTCCAACCGGCAT
                                    ||   || ||  |     ||   |   ||   ||    |||  |||  | |  |   ||  ||   | ||      ||| | || ||||| | ||||| || ||| |||| ||||| |||||||| ||| | ||||| ||||| || || |||||||| ||||||||||| ||||||||||| ||||
gtaagcatgtttatattcccttgggcttatattacatagacttgtgtatgaccaatgcaatgctaatgtttatgatcctcctc-tagcatgttctaactgaatttattggtttgcttcaccagGGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAAATCCTTGGTCCTTCTCTGGTTGCCCTCTACAATCCACTCCAACCAGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108291|gb|DV526709.1|DV526709
EST:     TCCACGAGTGGGCGCTGACAGCGACCGAGATCTTAGCCATCTTGTACGCT                         GGAGTCGTTGCGTCCTGCCTGAACTACGCGATCATGACCTGGGCGAACAAG
genomic: TCCACGAGTGGGCGCTGACAGCGACCGAGATCTTAGCCATCTTGTACGCTgtaagtttct ... tgcctgacagGGAGTCGTTGCGTCCTGCCTGAACTACGCGATCATGACCTGGGCGAACAAG
EST: gi|47962162|gb|CN844871.1|CN844871
EST:     TCCACGAGTGGGCGCTGACAGCGACCGAGATCTTAGCCATCTTGTACGCT                         GGAGTCGTTGCGTCCTGCCTGAAACTACGCGATCATGACCTGGGCGAACAA
genomic: TCCACGAGTGGGCGCTGACAGCGACCGAGATCTTAGCCATCTTGTACGCTgtaagtttct ... tgcctgacagGGAGTCGTTGCGTCCTGCCTGAA-CTACGCGATCATGACCTGGGCGAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttcgaaatctccctggttgtgtaaccttgcttctacctacctgcctgacagGGAGTCGTTGCGTCCTGCCTGAACTACGCGATCATGACCTGGGCGAACAAGATCCTCGGGCCGTCTCTGGTCGCCCTCTACAACCCACTCCAACCGGCAT
                      gtgtaac  putative branch site (score: 3)
                                       cctacct  putative PPT