1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttactatgatgatggactaactcattcgtcaaaccaaacaccctagccgtttctcgctttgaagtgtaacaatataacttagtcctaatctattggacagGCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTATTCCCCAATGCTCACCTGACCATTGGGAGCATGACACTGAACTCACATG
species | Zea mays |
transcript | GRMZM2G134888_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATAATACTGTACGTGGAGTTGTAT GCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTAEST: gi|71437524|gb|DR818574.1|DR818574
genomic: GATAATACTGTACGTGGAGTTGTATgtaagtatcc ... tattggacagGCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTA
EST: GATAATACTGTACGTGGAGTTGTAT GCATGTTGCATCGAGTATTTGATATTGGAGGEST: gi|94477485|gb|EB706443.1|EB706443
genomic: GATAATACTGTACGTGGAGTTGTATgtaagtatcc ... tattggacagGCATGTTGCATCGAGTATTTGATATTGGAGG
EST: GATAATACTGTACGTGGAGTTGTAT GCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTA
genomic: GATAATACTGTACGTGGAGTTGTATgtaagtatcc ... tattggacagGCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTA
gccgtttctcgctttgaagtgtaacaatataacttagtcctaatctattggacagGCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTATTCCCCAATGCTCACCTGACCATTGGGAGCATGACACTGAACTCACATG
tcctaat putative branch site (score: 60)
taacaatataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactatgatgatggactaactcattcgtcaaaccaaacaccctagccgtttctcgctttgaagtgtaacaatataacttagtcctaatctattggacagGCATGTTGCATCGAGTATTTGATATTGGAGGGTGACAATTTGTCAAAATTATTCCCCAATGCTCACCTGACCATTGGGAGCATGACACTGAACTCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - tgatgat
- - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata