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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtccctggagaagtctatttgatagcttgagcaagcatgtccaaaaaggcattactttttccacagttctgatcatgagctgattatgcctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT

Basic information

species Zea mays
transcript GRMZM2G134708_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211139780|gb|FL086553.1|FL086553
EST:     TGTGG-CAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGMCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139782|gb|FL086555.1|FL086555
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|149089132|gb|EE178315.2|EE178315
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|71445023|gb|DR826073.1|DR826073
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|84980717|gb|DW531066.1|DW531066
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTCTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|71422582|gb|DR805773.1|DR805773
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|19057725|gb|BM736392.1|BM736392
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGATCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|50327427|gb|CO522553.1|CO522553
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|76931161|gb|DV172672.1|DV172672
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139774|gb|FL086547.1|FL086547
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148931363|gb|EC874265.2|EC874265
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|149111140|gb|EE294635.2|EE294635
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|71439293|gb|DR820343.1|DR820343
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|71298889|gb|DR785439.1|DR785439
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|94478914|gb|EB707872.1|EB707872
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148951661|gb|EC897406.2|EC897406
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138836|gb|FL086537.1|FL086537
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148939718|gb|EC884396.2|EC884396
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139777|gb|FL086550.1|FL086550
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|88751027|gb|DY535168.1|DY535168
EST:     TGTGGGCAGCGGGGGAGAGAGACTACTTCCTGAATGGTACTCTGAAAAAG                         GCATTGAACTGATCCTGAATACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138837|gb|FL086538.1|FL086538
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138840|gb|FL086541.1|FL086541
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138844|gb|FL086545.1|FL086545
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|149111386|gb|EE294890.2|EE294890
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139778|gb|FL086551.1|FL086551
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAA-G                         GCATTGAACTGATCCTGAGTACTGAGATTCGTGAAGGCCGACCTTGCTTCA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATT-GTGAAGGCCGACCTTGCTTCA
EST: gi|211139786|gb|FL086559.1|FL086559
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138839|gb|FL086540.1|FL086540
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|149084652|gb|EE174137.2|EE174137
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138843|gb|FL086544.1|FL086544
EST:     TGTGG-CAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148941238|gb|EC886132.2|EC886132
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148936977|gb|EC881144.2|EC881144
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138838|gb|FL086539.1|FL086539
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148940672|gb|EC885484.2|EC885484
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|84980996|gb|DW531345.1|DW531345
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTCTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139779|gb|FL086552.1|FL086552
EST:     TGT-GGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148937253|gb|EC881434.2|EC881434
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148932994|gb|EE285869.2|EE285869
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139781|gb|FL086554.1|FL086554
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|33467502|gb|CF244551.1|CF244551
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|148934201|gb|EC878222.2|EC878222
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139776|gb|FL086549.1|FL086549
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139784|gb|FL086557.1|FL086557
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139787|gb|FL086560.1|FL086560
EST:     TGTGG-CAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211139775|gb|FL086548.1|FL086548
EST:     TGTGG-CAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138842|gb|FL086543.1|FL086543
EST:     TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
EST: gi|211138845|gb|FL086546.1|FL086546
EST:     TGTGGACAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAG                         GCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA
genomic: TGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 26

ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 517

ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 579

ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 215

ACGCTGCAAGACTGCCAGGCTTCCACACGTGTGTGGGCAGCGGTGGAGAGAGACTACTTCCTGAATGGTACTCTGAGAAAGgtaatctttt ... ctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggcattactttttccacagttctgatcatgagctgattatgcctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT
                                            cctgttttc  CT-rich tract
      attacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtccctggagaagtctatttgatagcttgagcaagcatgtccaaaaaggcattactttttccacagttctgatcatgagctgattatgcctgttttcagGCATTGAACTGATCCTGAGTACTGAGATTGTGAAGGCCGACCTTGCTTCAAAGACTCTGACCAGTGCAGCTGCGGAAACCTTCACATATGAGACCTTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- -ccctgga
- - - - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - -ccaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagctg