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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcagctcttcagatatgaacatgttgactagacggatatcatttaagatgattttcttttccctgattaatttctttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT

Basic information

species Zea mays
transcript GRMZM2G134396_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134396_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g49270.1 (Oryza sativa), 3'ss of exon 5
gtaagtgcagctcttcagatatga-acatgttgactagacgg-atatcatttaagatgattttcttttccctgat--taatttctttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT
|| ||||    ||   | || |    ||| || || | ||   |  |  |          ||||| | | || ||  |  |||| ||| ||||||| ||||| |||||||||||||| || |||||||| ||||||||||||||  
gtgagtgtgtttccctatattttctgcatattaacgatacaacacgttttcctgctctgctttctgtactctaattttgttttccttccttcagCATCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772853|gb|DR970776.1|DR970776
EST:     CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGAT                         CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
genomic: CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATgtaagtgcag ... tttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
EST: gi|19058010|gb|BM736677.1|BM736677
EST:     CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGAT                         CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
genomic: CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATgtaagtgcag ... tttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
EST: gi|50336750|gb|CO531876.1|CO531876
EST:     CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGAT                         CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
genomic: CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATgtaagtgcag ... tttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
EST: gi|22490387|gb|BU050310.1|BU050310
EST:     CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGAT                         CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
genomic: CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATgtaagtgcag ... tttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
EST: gi|87153046|gb|DY397835.1|DY397835
EST:     CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGAT                         CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT
genomic: CAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATgtaagtgcag ... tttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacggatatcatttaagatgattttcttttccctgattaatttctttctttcagCACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT
                                   gattaat  putative branch site (score: 3)
                      ttttcttttccctgat  CT-rich tract
                                    attaatttctttcttt  TA-rich tract