1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattattattattttcatgcattggaccttaataacttcttctgatgctatatggttacgtctttgttcccccctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
species | Zea mays |
transcript | GRMZM2G133885_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGCCCAGTGATATGCGTCTTCGAGAAGEST: gi|32844513|gb|CD984194.1|CD984194
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGATGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTEST: gi|6021540|gb|AW066468.1|AW066468
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGT
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGCACAGTGATATGCGTCTTCGAGAAGEST: gi|32912653|gb|CF017465.1|CF017465
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGATGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGEST: gi|32913231|gb|CF018043.1|CF018043
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGATGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGEST: gi|211196234|gb|FL472452.1|FL472452
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGEST: gi|78103985|gb|DV522403.1|DV522403
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTTTTCGAGAAGEST: gi|40302877|gb|CK347264.1|CK347264
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAGEST: gi|60396723|gb|DN229588.1|DN229588
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
EST: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAG TTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
genomic: GCATCACGTTCTTGAAAAAAGAGGGTGACTACGTCCGCAAAGGAGATGAGgtattattat ... cctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
cttaataacttcttctgatgctatatggttacgtctttgttcccccctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
ttacgtctttgttccc CT-rich tract
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattattattttcatgcattggaccttaataacttcttctgatgctatatggttacgtctttgttcccccctcttccagTTTGGGTATTTCTCCTTTGGAGGGAGTACAGTGATATGCGTCTTCGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG