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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtacttcagatattccctaccccttctcatcttcattctacttttgaacatgaagttatgcattcaatttcactctaccgttcgcctttatgtttcacatgtatataaactttatgtatgaaagttttccttcatgccttttctagtgtgcccctttaattctctctccgtttattttgcagGTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAA

Basic information

species Zea mays
transcript GRMZM2G133621_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133621_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 3'ss of exon 4
gtctgtacttcagatattccctaccccttctcatcttcattctact--tttgaacatgaagttatg---cattcaatttcactctaccgttcgcctttatgtttcacatgtat-ataaactttatgtatgaaagttttccttcatgccttttctagtgtgcccctttaattctctctccgtttattttgcagGTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAA
|||||||||| |    |  | |   |||| || || | ||||| |   ||| || | ||  || ||     ||| |  |   |||    ||  | | |||   | || | ||| ||||||||||       |||||||     | || ||||||||  |||    ||||  || ||||| |||| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
gtctgtacttga----tcacattgtccttttcctcctgattctgcctgttttaaaaagacattctgttatgttccacctgcttcttatattgtcatgtattggttacttctatgataaactttactgcctgaagtttt-----aggctttttctagcatgcattattaacactttctccatttactttgcagGTCCTAATACTTTTATTGAGACTCTTCGAGAGCGGATGTTTAGGCCATCACTATCTACCATTATTTCTGAGAATTCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttcatgccttttctagtgtgcccctttaattctctctccgtttattttgcagGTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAA
                          ctttaat  putative branch site (score: 4)
                       cccctttaattctctc  CT-rich tract
                                           tttatttt  TA-rich tract