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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgatagaatattctagagcaaattttcacgaaactgcatgcgcgcgcgtatcaaatgaaacctactcaaaaaccgaaaaatatattttccagaaaactgcgcgtatgaagtgaaataaacctacttataaaagtaaaaaaaacatgatctcacagaacatcgcgtgttcttttttttcccttaaattttcagGCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTCAACGGGATGAATTCCTACTTGTTCAACCACACCGTCGAATCCTGGCTGT

Basic information

species Zea mays
transcript GRMZM2G133555_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154115|gb|DY398904.1|DY398904
EST:     GCGAGCCGTCGTCAAGGGTGATGCAGAACCACGAGGAGTACGACCAAATG                         GCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTC
genomic: GCGAGCCGTCGTCAAGGGTGATGCAGAACCACGAGGAGTACGACCAAATGgcaagtgata ... aaattttcagGCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTC
EST: gi|87155035|gb|DY399824.1|DY399824
EST:     GCGAGCCGTCGTCAAGGGTGATGCAGAACCACGAGGAGTACGACCAAATG                         GCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTC
genomic: GCGAGCCGTCGTCAAGGGTGATGCAGAACCACGAGGAGTACGACCAAATGgcaagtgata ... aaattttcagGCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaacatgatctcacagaacatcgcgtgttcttttttttcccttaaattttcagGCGGCCAGCATGAAGGCAGAAGACATTCTCGATCCCGACGCCGCGCACTTCAACGGGATGAATTCCTACTTGTTCAACCACACCGTCGAATCCTGGCTGT
         atctcac  putative branch site (score: 3)
                             ttcttttttttccctt  putative PPT
                             ttctttttttt  TA-rich tract