1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaagtaggtctatctttcatataattgaaaattgattatttttttctgaggcactaggtattagccaactctcacctcttgtgtatttgtttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTACGGCTACAAAT
species | Zea mays |
transcript | GRMZM2G132968_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGEST: gi|29167714|gb|CB410974.1|CB410974
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATG
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|21843251|gb|BQ703832.1|BQ703832
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211283996|gb|FL031550.1|FL031550
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|67014068|gb|CO442817.1|CO442817
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAAT-TGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTEST: gi|67021955|gb|CO450704.1|CO450704
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTEST: gi|19351800|gb|BM896332.1|BM896332
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: GAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGCAAGAAGGCTCACCTGATGGAGATEST: gi|60398332|gb|DN231148.1|DN231148
genomic: GAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAG-AAGAAGGCTCACCTGATGGAGAT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211498695|gb|FL368204.1|FL368204
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGGTATCCGTGTCATTGCTCATACCCCG GEST: gi|211498695|gb|FL368204.1|FL368204
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttag-
EST: AGAAGATGAAGAAATATGCTTCTGGTATCCGTGTCATTGCTCATACCCCG GEST: gi|9731775|gb|BE510527.1|BE510527
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttag-
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|21987338|gb|BQ778866.1|BQ778866
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|31351952|gb|CD436309.1|CD436309
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: GAAGATGAAGAAATATGCTTCTGTTATCCGTGTCTATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTEST: gi|84980280|gb|DW530629.1|DW530629
genomic: GAAGATGAAGAAATATGCTTCTGTTATCCGTGTC-ATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTEST: gi|32851092|gb|CD990773.1|CD990773
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211473687|gb|FL374870.1|FL374870
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAA-TATGCTTCTGGTATCCGTGTCATTGCTCATACCNAG AT-ANGAAAGATGAAGGGTTTGAAACAGAAGA-GGCTCACCTGATGGAGATEST: gi|213172548|gb|FM192996.1|FM192996
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAA-GATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGAT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAGATTEST: gi|28873487|gb|CB329470.1|CB329470
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: GAAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGEST: gi|32855450|gb|CD995131.1|CD995131
genomic: GAA-GATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGG
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCATTATTATGCTCACCTGATGGAGATTEST: gi|211490786|gb|FL398948.1|FL398948
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATT
tctgaggcactaggtattagccaactctcacctcttgtgtatttgtttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTACGGCTACAAAT
ctctcac putative branch site (score: 860)
tatttgtttctttt putative PPT
tatttgtttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagtaggtctatctttcatataattgaaaattgattatttttttctgaggcactaggtattagccaactctcacctcttgtgtatttgtttcttttagATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTACGGCTACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - -gcactag