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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatattgtgtcagagctagtatacctatacacatgttccatctttcatttcagaaacttcatgctgatgacgaattatacttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATATTGTCACGTCGACTGATCTTTTCTCCGATTGTGTCAAGGGGCCTATTACA

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 3'ss of exon 3
gtaagtatattgtgtcagagctagtatacctatacacatgttcc----atctttcatttcagaaacttcatgctgatgacgaattatacttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATATTGTCACGTCGACTGATCTTTTCTCCGATTGTGTCAAGGGGCCTATTACA
|| || ||    ||  |||||||||| |  |||       | ||    || |||| ||||  ||| |||||  | |  || | |||  | | ||| |||||||||||||| |||||||| || |||||||| ||| ||||||||||| |||||| ||| || ||||||||||| ||| |  | ||||||||||| |||
gtcagcat----tgctagagctagtacatatattgctccctccctgatatttttcttttcgtaaatttcatagtaacaacaagtta--cctttttcagGGGTATGTCCAGTGCACATGCGATCTTTATCACAGCTATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccatctttcatttcagaaacttcatgctgatgacgaattatacttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATATTGTCACGTCGACTGATCTTTTCTCCGATTGTGTCAAGGGGCCTATTACA
                           tgctgat  putative branch site (score: 3)
                                             cttgtttt  putative PPT
                                      aattatacttgtttta  TA-rich tract