1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ctacatatttaagcacaccaatattttcttattcgtctgttagttataaccgtttcttgtttgtatatagtgaatttacaatgctatcttgttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG
species | Zea mays |
transcript | GRMZM2G132060_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|148974670|gb|EE025472.2|EE025472
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCCG GGGAAGAGAGGTATTGAGAAACAGCCTTTTTCCAGCTTCCTGACTTCATTGEST: gi|31359279|gb|CD443636.1|CD443636
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTT--CCAGCTTCCTGACTTCATTG
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|89761601|gb|DY689546.1|DY689546
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|148944299|gb|EC889396.2|EC889396
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|148931686|gb|EC874876.2|EC874876
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|211159306|gb|FL243892.1|FL243892
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGGTAT-GAGAAACAGCCTTTCCAGCTTCCTGACTTNCAT-GEST: gi|22521467|gb|BU080278.1|BU080278
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGG-TATTGAGAAACAGCCTTTCCAGCTTCCTGACTT-CATTG
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|91050200|gb|EB160618.1|EB160618
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|211159299|gb|FL243885.1|FL243885
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGGAG-TATTGAGAAACEST: gi|21843267|gb|BQ703848.1|BQ703848
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAG-AGGTATTGAGAAAC
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|148930320|gb|EE284721.2|EE284721
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCEST: gi|211162502|gb|FL243921.1|FL243921
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTC
EST: TACAGTACCTGGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGGAGAGGTATTGAGAAACAGGCCTT-CCAGCTTCTTGAACT-CATTEST: gi|148931684|gb|EC874873.2|EC874873
genomic: TACAGTACCTG-TCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAG-AGAGGTATTGAGAAACAG-CCTTTCCAGCTTCCTGA-CTTCATT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|26557871|gb|CA830106.1|CA830106
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGCAAGAGAGGTATTGCAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGEST: gi|148966452|gb|EE017460.2|EE017460
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGG-AAGAGAGGTATTG-AGAAACAGCCTTTCCAGCTTCCTGACTTCATTG
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTEST: gi|21843287|gb|BQ703868.1|BQ703868
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
EST: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAG GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
genomic: ATACAGTACCTGTCCCTAGGCACTGGTCTCAGAAGCGCAAGTTCTTGCAGgtttgtgact ... gttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCT
ataaccgtttcttgtttgtatatagtgaatttacaatgctatcttgttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG
ttataac putative branch site (score: 2)
tcttgtt putative PPT
tatatagtgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacatatttaagcacaccaatattttcttattcgtctgttagttataaccgtttcttgtttgtatatagtgaatttacaatgctatcttgttgtttcagGGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC