1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcaaccgaggataatctcttagtctgaagaactgtcgttccctgatttattttttgcaagagtaatgaaatggtttcacatcgatcccctcccccctcagGTCATGAGAAGGCTCGCGCAGAACAGGGAGGCTGCTCGGAAGAGTCGCCTGCGGAAAAAG
species | Zea mays |
transcript | GRMZM2G131961_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGGEST: gi|30307046|gb|CD001719.1|CD001719
genomic: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
EST: CACTCGAGCCAGAGAGGAGT-CGGATCAGGAAACGAGCAGGCCGCCAGAGAGGEST: gi|211079216|gb|FL043558.1|FL043558
genomic: CACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
EST: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGGGTACGTACGEST: gi|149089928|gb|EE179215.2|EE179215
genomic: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCC--AGA--G-A-G---G
EST: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGGEST: gi|148948317|gb|EC893834.2|EC893834
genomic: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
EST: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGGEST: gi|211107199|gb|FL022831.1|FL022831
genomic: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
EST: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
genomic: CTACAAGATGTTCCACAGGTAGCACTCGAGCCAGAGAGGAGTACGGATCAGGAAACGAGCAGGCCGCCAGAGAGG
tttattttttgcaagagtaatgaaatggtttcacatcgatcccctcccccctcagGTCATGAGAAGGCTCGCGCAGAACAGGGAGGCTGCTCGGAAGAGTCGCCTGCGGAAAAAG
tcgatcccctcccccc CT-rich tract
taatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaccgaggataatctcttagtctgaagaactgtcgttccctgatttattttttgcaagagtaatgaaatggtttcacatcgatcccctcccccctcagGTCATGAGAAGGCTCGCGCAGAACAGGGAGGCTGCTCGGAAGAGTCGCCTGCGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA