Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcagctccctcgatcatccctcgtcaccattttttccggccatcaatcaagtaaaaaaatggaaacgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTCGTGCAGACCAGCAGCCGCGTGGCCATCGGCGCCGCCATCTCGCCCGTCT

Basic information

species Zea mays
transcript GRMZM2G131650_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131650_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g07764.1 (Oryza sativa), 3'ss of exon 5
--------------------gtaagagcagctccctcgatcatccctcgtc--------accattttttccggccatcaatcaagtaa--aaaaatggaaacgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTCGTGCAGACCAGCAGCCGCGTGGCCATCGGCGCCGCCATCTCGCCCGTCT
                    |||  |     | ||| |    ||  |  |         |    |   || |  ||   | ||||| |   || |  ||  |     |||| | || ||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||| ||||||  | ||||| |||||||||||||| ||| |||
gtaagttctttgctagtaaagtagtaatctgttcctagtgtttcagtattagaagagagatagatcagtcagttcaaagaacaagttactgaagaatgatgcattgtgcagAATGATGCGTACCAGGAGACGGGTTGCTACAACCTGCACTGCTCAGGGTTCGTCCAGACCAACAGCCGGATCGCCATGGGCGCCGCCATCTCCCCCATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010479|gb|DT937649.1|DT937649
EST:     GCCTTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
EST: gi|12046190|gb|BF728329.1|BF728329
EST:     GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
EST: gi|86474297|gb|DY240667.1|DY240667
EST:     GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
EST: gi|78180215|gb|DV550588.1|DV550588
EST:     GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
EST: gi|6827523|gb|AW331166.1|AW331166
EST:     GCCCTCAGCTGGACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGCCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
EST: gi|149076068|gb|EE164645.2|EE164645
EST:     GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACA                         GACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC
genomic: GCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcag ... cgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcaccattttttccggccatcaatcaagtaaaaaaatggaaacgcaacgcagGACGACGCGTACCAGGAGACGGGCTGCTACAACCTCCACTGCTCGGGCTTCGTGCAGACCAGCAGCCGCGTGGCCATCGGCGCCGCCATCTCGCCCGTCT
                        aatcaagtaaaaaaat  TA-rich tract