1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttaagaatattccattgccgcatggtccccttgttattccttttcttagatgatttaagtattgcactctgtaaaactatcttgacatgatttgtcagGTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTGGGAATATATCTTCCTGGTGACATAAACTACCCAGGAGGACCCCTTTTTG
species | Zea mays |
transcript | GRMZM2G131489_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCAAGCCCTCTTGATG GTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTTEST: gi|78091368|gb|DV519742.1|DV519742
genomic: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCAAGCCCTCTTGATGgtaatactgt ... gatttgtcagGTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATT-
EST: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCCAGCCCTCTTGATG GTTGGACCAGAATATGCAAGGTATTGGTGGGATCGAGGCACTEST: gi|4609481|gb|AI600320.1|AI600320
genomic: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCAAGCCCTCTTGATGgtaatactgt ... gatttgtcagGTTGGACCAGAATATGCAAGGTATTG-TGGGATCGAGGCACT
EST: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCAAGCCCTCTTGATG GTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTG
genomic: CTGGTGGTCAAGGCGTCGTTGTAATTGCAATCTGCCAAGCCCTCTTGATGgtaatactgt ... gatttgtcagGTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTG
tcttagatgatttaagtattgcactctgtaaaactatcttgacatgatttgtcagGTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTGGGAATATATCTTCCTGGTGACATAAACTACCCAGGAGGACCCCTTTTTG
tcttgac putative branch site (score: 3)
atgatttaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaagaatattccattgccgcatggtccccttgttattccttttcttagatgatttaagtattgcactctgtaaaactatcttgacatgatttgtcagGTTGGACCAGAATATGCAAGGTATTGTGGGATCGAGGCACTAGAACCATTGGGAATATATCTTCCTGGTGACATAAACTACCCAGGAGGACCCCTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA