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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctattcctcctaactcttggtcctggatataaagcatatgtgctgcttgctgatgatattcagtggtctgaaacagtgcactttgtgtttttttgcagGACCAAACCATATGATGATGGAG

Basic information

species Zea mays
transcript GRMZM2G130440_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130440_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ31432 (Selaginella moellendorffii), 3'ss of exon 4
atctattcctcctaactcttggtcctggatataaagcatatgtgctgcttgctgatgatattcagtggtctgaaacagtgcactttgtgtttttttgcagGACCAAACCATATGATGATGGAG
                                   | |  | |   | ||     | | |  |  | | ||   |  ||  | ||  | || | |  ||||||||||||||||||||||||||
-----------------------------------gtaagtctatcgatt-----taaaaggcgtttggctactaatgtttagttcttattctct-acagGACCAAACCATATGATGATGGAG

upper sequence: GRMZM2G130440_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ38712 (Selaginella moellendorffii), 3'ss of exon 4
atctattcctcctaactcttggtcctggatataaagcatatgtgctgcttgctgatgatattcagtggtctgaaacagtgcactttgtgtttttttgcagGACCAAACCATATGATGATGGAG
                                   | |  | |   | ||     | | |  |  | ||||   |  ||  | ||  | || | |  ||||||||||||||||||||||||||
-----------------------------------gtaagtctatcgatt-----taaaaggcgtttgtctactaatgtttagttcttattctct-acagGACCAAACCATATGATGATGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211383314|gb|FK985177.1|FK985177
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATNGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGAT-GATGGAG
EST: gi|211391225|gb|FK985220.1|FK985220
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211393849|gb|FK985231.1|FK985231
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|149000688|gb|EE037899.2|EE037899
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211522447|gb|FK985268.1|FK985268
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAA
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211396467|gb|FK985242.1|FK985242
EST:     TGCTGTGGGGCTAAGTCGCCAACKAAATGGATCCATTATACCATCTGARC                         GACCAAGCCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211380677|gb|FK985162.1|FK985162
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAAC-ATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267398|gb|FK985117.1|FK985117
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211269827|gb|FK985120.1|FK985120
EST:     GCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTTGAAC                         GACCAAACCATATGATGATGGA
genomic: GCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCT-GAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGA
EST: gi|211380667|gb|FK985152.1|FK985152
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAC
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|149106392|gb|EE292114.2|EE292114
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAGCCCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211393851|gb|FK985233.1|FK985233
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATNGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGAT-GATGGAG
EST: gi|211522449|gb|FK985270.1|FK985270
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACTATATGATG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATG
EST: gi|211519437|gb|FK985255.1|FK985255
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATG
EST: gi|211267399|gb|FK985118.1|FK985118
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267391|gb|FK985110.1|FK985110
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATG-ATGGAG
EST: gi|211385938|gb|FK985180.1|FK985180
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211380674|gb|FK985159.1|FK985159
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATNATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCAT-ATGATGATGGAG
EST: gi|211262521|gb|FK985084.1|FK985084
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATNATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCAT-ATGATGATGGAG
EST: gi|211391219|gb|FK985214.1|FK985214
EST:     TGCTGTGGGGCTAAGTCGGCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211269835|gb|FK985128.1|FK985128
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211262526|gb|FK985089.1|FK985089
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGA
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGA
EST: gi|211264959|gb|FK985097.1|FK985097
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|149072859|gb|EE161112.2|EE161112
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211388576|gb|FK985197.1|FK985197
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211383313|gb|FK985176.1|FK985176
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|78180622|gb|DV550950.1|DV550950
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211396465|gb|FK985240.1|FK985240
EST:     GCTGGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAAC-ATATGATGATGGAG
genomic: GCTG-TGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|7844452|gb|AW787674.1|AW787674
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211380665|gb|FK985150.1|FK985150
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211391213|gb|FK985208.1|FK985208
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCANTATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCA-TATGATGATGGAG
EST: gi|211378023|gb|FK985145.1|FK985145
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGAT
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGAT
EST: gi|211519446|gb|FK985264.1|FK985264
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211388582|gb|FK985203.1|FK985203
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATNGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATAT-GATGATGGAG
EST: gi|211260083|gb|FK985071.1|FK985071
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAAC-ATATGATGGATGGAGGT
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATG-ATGGAGGT
EST: gi|211519449|gb|FK985267.1|FK985267
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267387|gb|FK985106.1|FK985106
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211269838|gb|FK985131.1|FK985131
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211262519|gb|FK985082.1|FK985082
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAA-CCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211396468|gb|FK985243.1|FK985243
EST:     GCTGTGGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GANCAAACCATATGATGATGGAG
genomic: GCTGTGGGG-CTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211378025|gb|FK985147.1|FK985147
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211262517|gb|FK985080.1|FK985080
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211393850|gb|FK985232.1|FK985232
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267394|gb|FK985113.1|FK985113
EST:     TGCTGTGGGGCTAAGTCGCCAACTAGATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211388581|gb|FK985202.1|FK985202
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267389|gb|FK985108.1|FK985108
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211393854|gb|FK985236.1|FK985236
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATTATGGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGG-AG
EST: gi|211391227|gb|FK985222.1|FK985222
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211383309|gb|FK985172.1|FK985172
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATNGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGAT-GATGGAG
EST: gi|211262524|gb|FK985087.1|FK985087
EST:     TGCTGTGGGGCTAAGTCGCYAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211388574|gb|FK985195.1|FK985195
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATNGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGAT-GATGGAG
EST: gi|211393847|gb|FK985229.1|FK985229
EST:     TGCTGTNGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAAC-ATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211380669|gb|FK985154.1|FK985154
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATNGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATAT-GATGATGGAG
EST: gi|211380672|gb|FK985157.1|FK985157
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAAC-ATATGATG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATG
EST: gi|7844027|gb|AW787230.1|AW787230
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211267393|gb|FK985112.1|FK985112
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAGGTGTGG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAGGTGTGG
EST: gi|211396477|gb|FK985252.1|FK985252
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|7844028|gb|AW787231.1|AW787231
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211519443|gb|FK985261.1|FK985261
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211269832|gb|FK985125.1|FK985125
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211383306|gb|FK985169.1|FK985169
EST:     TGCTGTGGGACTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATTATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|148947459|gb|EC892893.2|EC892893
EST:     GCTGTGGGGCTAAGTCGCCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGAT
genomic: GCTGTGGGGCTAAGTCGCC-AACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGAT
EST: gi|211519438|gb|FK985256.1|FK985256
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGATGGAG
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG
EST: gi|211393844|gb|FK985226.1|FK985226
EST:     TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAAC                         GACCAAACCATATGATGA
genomic: TGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 26 (upstream exon), 49 (downstream exon)
Score: 380

GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG


Block sizes: 23 (upstream exon), 49 (downstream exon)
Score: 789

GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 437

GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG


Block sizes: 23 (upstream exon), 47 (downstream exon)
Score: 403

GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacctg ... ttttttgcagGACCAAACCATATGATGATGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgctgatgatattcagtggtctgaaacagtgcactttgtgtttttttgcagGACCAAACCATATGATGATGGAG
    tgctgat  putative branch site (score: 403)
                                     ctttgtgttttttt  putative PPT
                                          tgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atctattcctcctaactcttggtcctggatataaagcatatgtgctgcttgctgatgatattcagtggtctgaaacagtgcactttgtgtttttttgcagGACCAAACCATATGATGATGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - ggtcctg
- - - - - - - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - -gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactt