1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaatcactatcttagatgtcatgtgatgttaaacctttcatcagcccattccttttttaaataaacaaatccaaaatacttgtgctggttatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCAAGCGTTGGTGAAGCGGAAGGAGCATAGGGAGGAGGGCAACGAGGGCGA
species | Zea mays |
transcript | GRMZM2G130348_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCEST: gi|21331057|gb|BQ486438.1|BQ486438
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCEST: gi|76013482|gb|DT940652.1|DT940652
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCEST: gi|26455381|gb|CA826964.1|CA826964
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCEST: gi|14203843|gb|BG837520.1|BG837520
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGATGGEST: gi|71771777|gb|DR969714.1|DR969714
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGA-GG
EST: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTG ATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatct ... tatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGC
cccattccttttttaaataaacaaatccaaaatacttgtgctggttatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCAAGCGTTGGTGAAGCGGAAGGAGCATAGGGAGGAGGGCAACGAGGGCGA
ttttttaaataaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatcactatcttagatgtcatgtgatgttaaacctttcatcagcccattccttttttaaataaacaaatccaaaatacttgtgctggttatgctgcagATACCGTGGTGCTGGAGTTTAATCAGTACACGCCGGGCTCAAGGTGGAGGCAAGCGTTGGTGAAGCGGAAGGAGCATAGGGAGGAGGGCAACGAGGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - -tgtcatg
- - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - -ctttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgg