1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttcaaaaccaattaatacactcattcttgtttgacatgggtaagcctatccaatctttaagttatacctcataaaattttatacacatcttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAAAACTGGTAGCTACCAAGAACAAAGCTGTTATCCAAGCTGAGTTGGCAG
species | Zea mays |
transcript | GRMZM2G130332_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|87155814|gb|DY400603.1|DY400603
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|91052902|gb|EB163320.1|EB163320
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GGAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAAACATCCCEST: gi|93014173|gb|EB639693.1|EB639693
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCC
EST: TCATACTGGTGCTGGGAAGATCATTTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGEST: gi|91878422|gb|EB408379.1|EB408379
genomic: TCATACTGGTGCTGGGAAGATCATT-CCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATG
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGACATACAAAGTGATGGGCAG GTAAAGGTTTATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|148961368|gb|EE012101.2|EE012101
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|71324621|gb|DR799009.1|DR799009
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|71769300|gb|DR967237.1|DR967237
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|78088914|gb|DV517307.1|DV517307
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|76286735|gb|DV026303.1|DV026303
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|78088792|gb|DV517185.1|DV517185
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|50337846|gb|CO532972.1|CO532972
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|211026296|gb|FL344450.1|FL344450
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|22133843|gb|BQ833933.1|BQ833933
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|24773782|gb|CA409036.1|CA409036
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGG-GCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|71329026|gb|DR801212.1|DR801212
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|26558147|gb|CA830382.1|CA830382
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCEST: gi|76014966|gb|DT942136.1|DT942136
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGC
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|101395236|gb|EB819548.1|EB819548
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GGAAAGGTTGATATGGGAGAGCCCATCCTTTCCGGAGCAGACATCCCCACAEST: gi|148961806|gb|EE012586.2|EE012586
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|71443835|gb|DR824885.1|DR824885
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|26559567|gb|CA831802.1|CA831802
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|101383177|gb|EB813643.1|EB813643
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|148970899|gb|EE021693.2|EE021693
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|74233526|gb|DT641440.1|DT641440
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAEST: gi|76017579|gb|DT944749.1|DT944749
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
EST: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAG GTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
genomic: TTCATACTGGTGCTGGGAAGATCATTCCTGAAATACAAAGTGATGGGCAGgtaaatattt ... ttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACA
cctatccaatctttaagttatacctcataaaattttatacacatcttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAAAACTGGTAGCTACCAAGAACAAAGCTGTTATCCAAGCTGAGTTGGCAG
tcttgttttc CT-rich tract
tttaagttatacctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaaaccaattaatacactcattcttgtttgacatgggtaagcctatccaatctttaagttatacctcataaaattttatacacatcttgttttcagGTAAAGGTTGATATGGGAGAGCCCATCCTTTCTGGAGCAGACATCCCCACAAAACTGGTAGCTACCAAGAACAAAGCTGTTATCCAAGCTGAGTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA