Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttataactacaataattgtattctagttctagggtacagacatcattatgatatttttgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTGAACAGGGCAATATCAGAGTATGAGGTGTCAAAGAGTTCAGGAAGCTATC

Basic information

species Zea mays
transcript GRMZM2G130230_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 3'ss of exon 4
gtaagttgttataactacaataattgtattctagttctagggtacagacatcattatgatatttttgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTGAACAGGGCAATATCAGAGTATGAGGTGTCAAAGAGTTCAGGAAGCTATC
|| ||||||| |   ||   |||      | | ||  |   |  || || |||||||||||  ||| | | |||||||||||||||||||||||||||||| |  |||||||||||||||||| |||||| || ||| ||||||||||||  |||||| |  |||| ||||  ||
gtgagttgttgtttgtaatgtaaccaccattttgtgat---gcgcacacgtcattatgataaatttctttttcagATAAAATATGTCAGTGGTTCCTATGACAGCGGAGAAGGATTTGAGAAATTGAACAAGGAAATTTCAGAGTATGAGAAGTCAAACAAATCAGAAAGCCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93283386|gb|EB675650.1|EB675650
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|71449499|gb|DR830549.1|DR830549
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|78083439|gb|DV511832.1|DV511832
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|71436592|gb|DR817642.1|DR817642
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|89757409|gb|DY687024.1|DY687024
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|71447340|gb|DR828390.1|DR828390
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|50339442|gb|CO534568.1|CO534568
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|74237092|gb|DT645006.1|DT645006
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|71449885|gb|DR830935.1|DR830935
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|89759526|gb|DY688327.1|DY688327
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
EST: gi|78109778|gb|DV528194.1|DV528194
EST:     GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTA                         ATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG
genomic: GTATCTCAAAGGAGCCCCAGAAGATCTTTCAGAATTTTTGCAACTAgtaagttgtt ... tgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgtattctagttctagggtacagacatcattatgatatttttgtgtctcagATAAAATATGTCAGTGGTTCCTATGATACTGGAGAAGGATTTGAGAAACTGAACAGGGCAATATCAGAGTATGAGGTGTCAAAGAGTTCAGGAAGCTATC
                                       tattttt  CT-rich tract
                             atcattatgatatttt  TA-rich tract