1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgcaagacttgtcttttaacagcatatatatgatgctctatatatgatcaacgggagagagagaaaactaacaatcctggttttgaaattctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAG
species | Zea mays |
transcript | GRMZM2G129954_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|211399019|gb|FL440142.1|FL440142
genomic: GATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|91878635|gb|EB408592.1|EB408592
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|40303893|gb|CK348280.1|CK348280
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|211213579|gb|FL456137.1|FL456137
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|5895964|gb|AW037210.1|AW037210
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|19822364|gb|BQ048388.1|BQ048388
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|211009672|gb|FL207156.1|FL207156
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCTTG-AGGAAEST: gi|76933672|gb|DV173539.1|DV173539
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAA
EST: TCCCGGTGGTGATCATGTCCTCTGAGACCATTCC-TCAAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|37382649|gb|CF628283.1|CF628283
genomic: TCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTC-AAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|76933673|gb|DV173540.1|DV173540
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|5597298|gb|AI891396.1|AI891396
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|40335323|gb|CK369393.1|CK369393
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|91869452|gb|EB400392.1|EB400392
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|113704219|gb|EE681723.1|EE681723
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|74237752|gb|DT645666.1|DT645666
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCEST: gi|211012453|gb|FL207171.1|FL207171
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
EST: ATCCCGGTGGTGATCATGTCCTCCGAGAACATTCCTTCAAGGATCAATAG GTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
genomic: ATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGgtgagcagtc ... tctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATC
tgatcaacgggagagagagaaaactaacaatcctggttttgaaattctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAG
aactaac putative branch site (score: 29)
ttttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaagacttgtcttttaacagcatatatatgatgctctatatatgatcaacgggagagagagaaaactaacaatcctggttttgaaattctgaaccagGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
ttgcaag
- - - - - - - - - aacagca
- - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctggt