1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgcaccagatacggcacctcctttttgtctccttgagcatatatgatttatatatggggcatccaaaactctgttattatctgttgcactggatttgatattggttgtcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGATGTATGGGTCGCAGTGGGTTGGAGCAGCGACGTGATCCCTGCTGCAAAGC
species | Zea mays |
transcript | GRMZM2G129071_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGGTAGAGCAGCAGTCCTAAACAGCTTTACGCAACTACAGAAGCAG GTCCAACTTTTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGATEST: gi|211175272|gb|FL438827.1|FL438827
genomic: ATGGTGGTAGAGCAGCAGTCCTAAACAGCTTTACGCAACTACAGAAGCAGgtttgcacca ... tcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGAT
EST: GGTGGTAGAGCAGCAGTCCTAAACAGTTTTACGCAACTACAGAAGCAG GTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGATEST: gi|4776059|gb|AI665062.1|AI665062
genomic: GGTGGTAGAGCAGCAGTCCTAAACAGCTTTACGCAACTACAGAAGCAGgtttgcacca ... tcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGAT
EST: ATGGTGGTAGAGCAGCAGTCCT-AACAGCTTTACGCAACTACAGAAGCAG GTCCAACTTTTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGAT
genomic: ATGGTGGTAGAGCAGCAGTCCTAAACAGCTTTACGCAACTACAGAAGCAGgtttgcacca ... tcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGAT
ccaaaactctgttattatctgttgcactggatttgatattggttgtcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGATGTATGGGTCGCAGTGGGTTGGAGCAGCGACGTGATCCCTGCTGCAAAGC
atttgat putative branch site (score: 32)
ttgtcttc putative PPT
atttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaccagatacggcacctcctttttgtctccttgagcatatatgatttatatatggggcatccaaaactctgttattatctgttgcactggatttgatattggttgtcttcggtagGTCCAACTATTCGACAGCATGAACTATCTGAAGTCGTTTAGTGTTGGAGATGTATGGGTCGCAGTGGGTTGGAGCAGCGACGTGATCCCTGCTGCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG