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gtcttgtcctgctcttcaatttggtttcttcaaacttctttcttttctttgtatgaatttgttttgtttggattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGGCTTCCTTAACTTTCACCAAGAGCCCCCCTGATAATGCAAAGAATATGTC
species | Zea mays |
transcript | GRMZM2G128688_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAG AAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGGTGGGEST: gi|149096163|gb|EE181859.2|EE181859
genomic: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct ... gattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGG
EST: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAG AAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGGEST: gi|94477374|gb|EB706332.1|EB706332
genomic: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct ... gattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGG
EST: TGAAATAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAG AAGAACAGTTAGATTTTCCAGTTCTTTATGCATCCGCTAAAGAGGGEST: gi|71428852|gb|DR809902.1|DR809902
genomic: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct ... gattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGG
EST: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAG AAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGGEST: gi|149075128|gb|EE163621.2|EE163621
genomic: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct ... gattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGG
EST: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAG AAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGG
genomic: TGAAGTAGAGAGCTTGGTTTTTGATCTTTTTGCAAATCTTGGTGCTACAGgtcttgtcct ... gattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGG
ttcttcaaacttctttcttttctttgtatgaatttgttttgtttggattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGGCTTCCTTAACTTTCACCAAGAGCCCCCCTGATAATGCAAAGAATATGTC
tatgaatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgtcctgctcttcaatttggtttcttcaaacttctttcttttctttgtatgaatttgttttgtttggattttgcagAAGAACAGTTAGATTTCCCAGTTCTTTATGCATCCGCTAAAGAGGGTTGGGCTTCCTTAACTTTCACCAAGAGCCCCCCTGATAATGCAAAGAATATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA