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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggggacgtaggtgacactccaaggtaagttggaggaccggcagtgcactgcactctaaattgtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG

Basic information

species Zea mays
transcript GRMZM2G128080_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128080_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 3'ss of exon 4
ttggggacgtaggtgacactccaaggtaagttggaggaccggcagtgcactgcactctaaatt-gtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG
                      |   ||| |       |      |    |    ||||  || ||||  ||||  ||||||||| ||| ||| ||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||  ||  |||
-------------------gttagtataaatgttgttcctttacatcggttctgttctaggtttgtaacggatccaatatgtttgtcat-gactatttcagGTACAAGAATATGTTGAAGCTGCAACATTCTGCAGATTTTGCAAGACTGGCACTTTATTAAGTCTTGCTGAAATCAATGATTCTTTGCTAGAGCTGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191937|gb|FL162063.1|FL162063
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211191936|gb|FL162062.1|FL162062
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|60356030|gb|DN223003.1|DN223003
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211191938|gb|FL162064.1|FL162064
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211191935|gb|FL162061.1|FL162061
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|60343645|gb|DN210618.1|DN210618
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactgcactctaaattgtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG
                                        cattgac  putative branch site (score: 3)
            taaattgtaatagat  TA-rich tract