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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggggacgtaggtgacactccaaggtaagttggaggaccggcagtgcactgcactctaaattgtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG

Basic information

species Zea mays
transcript GRMZM2G128080_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128080_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 3'ss of exon 4
ttggggacgtaggtgacactccaaggtaagttggaggaccggcagtgcactgcactctaaatt-gtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG
                      |   ||| |       |      |    |    ||||  || ||||  ||||  ||||||||| ||| ||| ||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||  ||  |||
-------------------gttagtataaatgttgttcctttacatcggttctgttctaggtttgtaacggatccaatatgtttgtcat-gactatttcagGTACAAGAATATGTTGAAGCTGCAACATTCTGCAGATTTTGCAAGACTGGCACTTTATTAAGTCTTGCTGAAATCAATGATTCTTTGCTAGAGCTGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626347|gb|AW257879.1|AW257879
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|149042519|gb|EE047203.2|EE047203
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|76286839|gb|DV026407.1|DV026407
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|101382451|gb|EB813281.1|EB813281
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|148938451|gb|EC882769.2|EC882769
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|60356030|gb|DN223003.1|DN223003
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211158653|gb|FK974899.1|FK974899
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211185838|gb|FL326885.1|FL326885
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|211477295|gb|FL319648.1|FL319648
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTT
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTT
EST: gi|211439800|gb|FL306622.1|FL306622
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|71328613|gb|DR800971.1|DR800971
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
EST: gi|60343645|gb|DN210618.1|DN210618
EST:     AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGT                         GTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC
genomic: AATTACAAGGAACTGACTTCTGGAAACTCAGAAGAGCCTACACCTTTGGTgttagtacta ... accattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactgcactctaaattgtaatagatctgatatgtttgccattgaccattgcagGTACAAGAATATGTCGAAGCTGCAACACTCTGTAGATTTTGCAAGACTGGCACTCTATTAAGCCTTGCTGAAATCAATGATTCTTTACTAGCACTAAGTG
                                        cattgac  putative branch site (score: 3)
            taaattgtaatagat  TA-rich tract