1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgatcaatcatactgctctagatacatgtgcatgaaatatactaagtgttctttcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAGCTGGACA
species | Zea mays |
transcript | GRMZM2G127101_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGCCACAACTTGGCCAACAACAAEST: gi|211253494|gb|FL469932.1|FL469932
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|211119111|gb|FL479446.1|FL479446
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|31351028|gb|CD435385.1|CD435385
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTCAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|78107355|gb|DV525773.1|DV525773
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|148983365|gb|EE029351.2|EE029351
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|31352246|gb|CD436603.1|CD436603
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTCAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|86468765|gb|DY235135.1|DY235135
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|67019053|gb|CO447802.1|CO447802
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTCAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAEST: gi|149094648|gb|EE180187.2|EE180187
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAG CAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTGAGAATCCAGAATTTCTTCGCCAGTTAACATCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
catactgctctagatacatgtgcatgaaatatactaagtgttctttcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAGCTGGACA
tgttctttcttttgc CT-rich tract
atgaaatatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcaatcatactgctctagatacatgtgcatgaaatatactaagtgttctttcttttgcagCAATTAATTTCGTTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAGCTGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA