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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaggggaaatcttggcgatgcaatataatactcaaaattcctcctctgaaacctgtagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG

Basic information

species Zea mays
transcript GRMZM2G126900_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 3'ss of exon 5
----------------------------------gtaagcaaggggaaatcttggc-gatgcaat-----ataata-ctcaaaat---tcctcctctgaaacc---tgt-----agctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG
                                  |  | |     ||||  |   | ||| ||       | |||| || || ||   |||  ||||||| |    |||     | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
gtaagaaacaaacaacagaagcaaacagcttattgccatctcactgaaacttcttcagattcagctaggaacaatagctgaacatccatccatctctgaatctgaatgtctttgacctttcagGTGACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31363556|gb|CD447913.1|CD447913
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|211533467|gb|FL294715.1|FL294715
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCG
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCG
EST: gi|211533468|gb|FL294716.1|FL294716
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGT
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGT
EST: gi|67014192|gb|CO442941.1|CO442941
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGGCA-CGTCCACTTC
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTG-CAACGTCCACTTC
EST: gi|78084506|gb|DV512899.1|DV512899
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|88752150|gb|DY536291.1|DY536291
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|76289997|gb|DV029565.1|DV029565
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|78119916|gb|DV538300.1|DV538300
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|149042044|gb|EE047019.2|EE047019
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|148960892|gb|EE011574.2|EE011574
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|60339537|gb|DN206510.1|DN206510
EST:     CACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: CACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|15554177|gb|BI644175.1|BI644175
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|93281927|gb|EB674191.1|EB674191
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|211530472|gb|FL294712.1|FL294712
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGT
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGT
EST: gi|93284184|gb|EB676448.1|EB676448
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|60397791|gb|DN230607.1|DN230607
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|78112469|gb|DV530863.1|DV530863
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|60342265|gb|DN209238.1|DN209238
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|15057218|gb|BI361190.1|BI361190
EST:     CCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: CCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|93016474|gb|EB641994.1|EB641994
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|78076468|gb|DV504902.1|DV504902
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|78119915|gb|DV538299.1|DV538299
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|148941676|gb|EC886623.2|EC886623
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|40303359|gb|CK347746.1|CK347746
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|101386278|gb|EB815159.1|EB815159
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|67041064|gb|CO467319.1|CO467319
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|149010866|gb|EE042255.2|EE042255
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|78088525|gb|DV516918.1|DV516918
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|149100878|gb|EE186973.2|EE186973
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|71325953|gb|DR799659.1|DR799659
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|60396286|gb|DN229155.1|DN229155
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|93281928|gb|EB674192.1|EB674192
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCCACTTC
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCC-ACTTC
EST: gi|211354362|gb|FL217076.1|FL217076
EST:     GCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAAYG-CNCACTTC
genomic: GCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTC-CACTTC
EST: gi|78114314|gb|DV532703.1|DV532703
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCT
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCA
EST: gi|148942392|gb|EC887411.2|EC887411
EST:     GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCG                         GTGACACCTTCCCCGTCGGCTGCGCATACGACGA
genomic: GGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaagcaagg ... tagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggcgatgcaatataatactcaaaattcctcctctgaaacctgtagctttcagGTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAG
                                                ctttc  CT-rich tract
           aatataatactcaaaa  TA-rich tract