1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaagcctctcgcgttccagatggtccagtccagcattttccttccacgatagcacttcccctgacgagtgtttttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA
species | Zea mays |
transcript | GRMZM2G126765_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|31558116|gb|CD527328.1|CD527328
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTAAEST: gi|18170840|gb|BM340680.1|BM340680
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|31558117|gb|CD527329.1|CD527329
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18167985|gb|BM337825.1|BM337825
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAAAAACCAACCGGTCCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18175011|gb|BM350399.1|BM350399
genomic: ACGTGAGAAACCAGCCGGT-CCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: CAGCCGGTCGTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|78093024|gb|DV521398.1|DV521398
genomic: CAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCTGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18163480|gb|BM333319.1|BM333319
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18166488|gb|BM336327.1|BM336327
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18176420|gb|BM351381.1|BM351381
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|37388689|gb|CF631556.1|CF631556
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18167235|gb|BM337074.1|BM337074
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18161992|gb|BM331831.1|BM331831
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAACCGGTCCTCATCCAATGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGAATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18175417|gb|BM350752.1|BM350752
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18168798|gb|BM338638.1|BM338638
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|28986278|gb|CB351056.1|CB351056
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18169478|gb|BM339318.1|BM339318
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: AAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18173977|gb|BM349365.1|BM349365
genomic: AAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18167555|gb|BM337394.1|BM337394
genomic: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|28986707|gb|CB351270.1|CB351270
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: CCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|17929863|gb|BM266823.1|BM266823
genomic: CCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18162825|gb|BM332664.1|BM332664
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|16921811|gb|BM075311.1|BM075311
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|17930139|gb|BM267099.1|BM267099
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18170685|gb|BM340525.1|BM340525
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|16920825|gb|BM074849.1|BM074849
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18168498|gb|BM338338.1|BM338338
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18167487|gb|BM337326.1|BM337326
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|76283506|gb|DV023074.1|DV023074
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18170266|gb|BM340106.1|BM340106
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTAAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18165198|gb|BM335037.1|BM335037
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|78093023|gb|DV521397.1|DV521397
genomic: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCTGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18172194|gb|BM347582.1|BM347582
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCATCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18164282|gb|BM334121.1|BM334121
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGT-AAAAACACAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|17929626|gb|BM266586.1|BM266586
genomic: ACGTGAGAAAC-CAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18168877|gb|BM338717.1|BM338717
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|18167709|gb|BM337549.1|BM337549
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCEST: gi|16922990|gb|BM075982.1|BM075982
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
gtccagcattttccttccacgatagcacttcccctgacgagtgtttttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA
ccctgac putative branch site (score: 2)
tgtttttctttc putative PPT
tttttcttt TA-rich tract