1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtctctctctgcccctgcttcgccacgttctcatgtggaaaggggggaactgactgactgactgactgatcgaatgggctgccggcctcgcctctgaatctctctgatgcagGTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGGAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
species | Zea mays |
transcript | GRMZM2G126505_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCGEST: gi|149111558|gb|EE190691.2|EE190691
genomic: GCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCGATTCGAGgtcagtctct ... tctgatgcagGTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCG
EST: GCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCG
genomic: GCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCGATTCGAGgtcagtctct ... tctgatgcagGTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCG
ctgactgactgatcgaatgggctgccggcctcgcctctgaatctctctgatgcagGTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGGAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
tctctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtctctctctgcccctgcttcgccacgttctcatgtggaaaggggggaactgactgactgactgactgatcgaatgggctgccggcctcgcctctgaatctctctgatgcagGTTGCTCCCAAGCCCAACACGTTCATGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGGAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG