1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actgaataaaacaatccccttttagtaaattgacgcatgcaataagttcagttgatagatatcacatttttgtgatagtaactatattgtgtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATTTCCTTGGAGAGGACTATGATGATGAGGGACATAAATTGTCTGAAGCTAT
species | Zea mays |
transcript | GRMZM2G126446_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTG ATCGTATCAGAAAGATATATGAGGCATTCCCAAEST: gi|211292829|gb|FL302055.1|FL302055
genomic: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTGgtcaggtttt ... gtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAA
EST: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTG ATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATTEST: gi|88746185|gb|DY530326.1|DY530326
genomic: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTGgtcaggtttt ... gtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATT
EST: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTG ATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATTEST: gi|211292830|gb|FL302056.1|FL302056
genomic: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTGgtcaggtttt ... gtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATT
EST: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTG ATCGTATCAGAAAGATATATG
genomic: TGTTGACATCCTCATCACAGGAGAGTTTCCATATAGTGAACAATTTTTTGgtcaggtttt ... gtaacattagATCGTATCAGAAAGATATATG
gttcagttgatagatatcacatttttgtgatagtaactatattgtgtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATTTCCTTGGAGAGGACTATGATGATGAGGGACATAAATTGTCTGAAGCTAT
atagtaactatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaataaaacaatccccttttagtaaattgacgcatgcaataagttcagttgatagatatcacatttttgtgatagtaactatattgtgtaacattagATCGTATCAGAAAGATATATGAGGCATTCCCAAGGATAACCGTTCCACATTTCCTTGGAGAGGACTATGATGATGAGGGACATAAATTGTCTGAAGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - aataaaa
- - - - - - - - - - - - - - - - -cgcatgc