1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttagtttctttttcttgtcacttctcattgcaacttgatcatcatgccaagtacgtgacttttgtttactcaaaatttcacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGACTGGACCATGGGTCAATCTTGCACTGATTCATACACCAAGACTTTGAAG
species | Zea mays |
transcript | GRMZM2G125556_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTKCTTGAGCATCCAGAEST: gi|76285485|gb|DV025053.1|DV025053
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|93282355|gb|EB674619.1|EB674619
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTTTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTTGTAACCTGCTTGAGCATCCAGAEST: gi|211464240|gb|FL298404.1|FL298404
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCCATGGACTTCCTTGTTGAGTTGGTTTCGTAACCTGCTTGAGCATCCEST: gi|211377924|gb|FL095474.1|FL095474
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCC-ATGGACTTCCTTGTTGAGTTG-TTTCGTAACCTGCTTGAGCATCC
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041272|gb|FL124819.1|FL124819
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041274|gb|FL124821.1|FL124821
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211475759|gb|FL124816.1|FL124816
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211464236|gb|FL298400.1|FL298400
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|71771167|gb|DR969104.1|DR969104
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211466762|gb|FL298407.1|FL298407
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211464239|gb|FL298403.1|FL298403
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041277|gb|FL124824.1|FL124824
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGEST: gi|60400894|gb|DN233701.1|DN233701
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTG
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|76283007|gb|DV022575.1|DV022575
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211466767|gb|FL298412.1|FL298412
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGEST: gi|211041276|gb|FL124823.1|FL124823
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCC-TTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAG
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041273|gb|FL124820.1|FL124820
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211466771|gb|FL298416.1|FL298416
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211475757|gb|FL124814.1|FL124814
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|71421128|gb|DR805308.1|DR805308
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041270|gb|FL124817.1|FL124817
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211041271|gb|FL124818.1|FL124818
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|93282356|gb|EB674620.1|EB674620
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGAEST: gi|211464238|gb|FL298402.1|FL298402
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
EST: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAG GGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
genomic: ACCGCAAAAGGTTCCTCAAGCTGCACAAATGGGCTTCTGTGGCTGACGAGgtacttagtt ... cacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGA
cttgatcatcatgccaagtacgtgacttttgtttactcaaaatttcacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGACTGGACCATGGGTCAATCTTGCACTGATTCATACACCAAGACTTTGAAG
acttgat putative branch site (score: 5)
tttactcaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttagtttctttttcttgtcacttctcattgcaacttgatcatcatgccaagtacgtgacttttgtttactcaaaatttcacatgtcagGGCCATGGACTTCCTTGTTGAGTTGTTTCGTAACCTGCTTGAGCATCCAGACTGGACCATGGGTCAATCTTGCACTGATTCATACACCAAGACTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG