1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacacaatctcattcatacttgcgtcaagtaaatgctaaccattttgtggtcgcatgcaactttaagtgtctgtcatttatgtgatgtcctgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGGACT
species | Zea mays |
transcript | GRMZM2G125516_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TNNNNNNNTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAG GTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGGEST: gi|149083882|gb|EE173258.2|EE173258
genomic: TGGGGGGTTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAGgtattgtaaa ... tgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGG
EST: TGGGGGGTTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAG GTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGGEST: gi|30306496|gb|CD001169.1|CD001169
genomic: TGGGGGGTTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAGgtattgtaaa ... tgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGG
EST: TGGGGGGTTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAG GTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGG
genomic: TGGGGGGTTCATTTGGGGAGGATCTCAACAGCATAGAGGCTGGCTGGCAGgtattgtaaa ... tgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGG
tgtggtcgcatgcaactttaagtgtctgtcatttatgtgatgtcctgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGGACT
tcctgttc CT-rich tract
aactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacacaatctcattcatacttgcgtcaagtaaatgctaaccattttgtggtcgcatgcaactttaagtgtctgtcatttatgtgatgtcctgttcatcagGTTAGCCCTGACCTCTATGGAGACAACAACACCAGGCTGTTCACATATTGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
gacacaa
- - - - - - - - tacttgc
- - - - - - - - - - - - - - - - atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - -cgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg