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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtttctatgacttgtgagactatgcatcacctgaaaatagaatttacacaattctgattcttaagtattttatgtaaatttaatctactgttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTTAGGCAAAAAGCTACTCTTGAGCTCACCCA

Basic information

species Zea mays
transcript GRMZM2G125310_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13178259|gb|BG349517.1|BG349517
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|78113103|gb|DV531497.1|DV531497
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|21843377|gb|BQ703958.1|BQ703958
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|149071547|gb|EE159940.2|EE159940
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|13198653|gb|BG354455.1|BG354455
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376698|gb|FL282321.1|FL282321
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACCAG                         GATGTGACCTTANCCCCCTGATGATCATATCAAGCGGACTGAATGGACTNT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCC-TGATGATCATATCAAGCGGACTGAATGGACT-T
EST: gi|18168536|gb|BM338376.1|BM338376
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|37378102|gb|CF625710.1|CF625710
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376699|gb|FL282322.1|FL282322
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376692|gb|FL282315.1|FL282315
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|113701200|gb|EE678704.1|EE678704
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211215770|gb|FL437216.1|FL437216
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|18172655|gb|BM348043.1|BM348043
EST:     TCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: TCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211338211|gb|FL470835.1|FL470835
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376696|gb|FL282319.1|FL282319
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211280531|gb|FL042849.1|FL042849
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|13178258|gb|BG349516.1|BG349516
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|13178537|gb|BG349795.1|BG349795
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|67022929|gb|CO451678.1|CO451678
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|113703344|gb|EE680848.1|EE680848
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|30087092|gb|CB885300.1|CB885300
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|15056964|gb|BI360936.1|BI360936
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|18163234|gb|BM333073.1|BM333073
EST:     GGTTGGATTTTAAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|18173071|gb|BM348459.1|BM348459
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|13558789|gb|BG550144.1|BG550144
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|29167847|gb|CB411107.1|CB411107
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|67031599|gb|CO460348.1|CO460348
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|40334690|gb|CK368760.1|CK368760
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376693|gb|FL282316.1|FL282316
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|30087617|gb|CB885823.1|CB885823
EST:     GGCTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|28909695|gb|CB331056.1|CB331056
EST:     TATTTTCTAGGGTTACGA-                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTT
genomic: TATTTTCTA-GGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTT
EST: gi|213175278|gb|FM194527.1|FM194527
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTA-TTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|211376697|gb|FL282320.1|FL282320
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|149069536|gb|EE157909.2|EE157909
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|71314913|gb|DR794077.1|DR794077
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|113702988|gb|EE680492.1|EE680492
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|78080156|gb|DV508568.1|DV508568
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
EST: gi|30032081|gb|CB833932.1|CB833932
EST:     GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAG                         GATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT
genomic: GGTTGGATTTTGAAGAGATGAAATTCAGTTTGTATTTTCTAGGTTACGAGgtataagttt ... ttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacaattctgattcttaagtattttatgtaaatttaatctactgttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTTAGGCAAAAAGCTACTCTTGAGCTCACCCA
     attctgattcttaagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataagtttctatgacttgtgagactatgcatcacctgaaaatagaatttacacaattctgattcttaagtattttatgtaaatttaatctactgttgcttgtagGATGTGACCTTAGCCCCTGATGATCATATCAAGCGGACTGAATGGACTTTTAGGCAAAAAGCTACTCTTGAGCTCACCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA