1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaagtcattttgattatgaagtgtggattcactgtgagctgtgaaatttatggcttaatacaccacaaatattaattgctctgtttggtaatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTTGGCTGTGAGAGCATTCCTATGTCAGGACTATCAGAAATGCTTGGTCACC
species | Zea mays |
transcript | GRMZM2G124502_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCAACTTGAG GATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTTEST: gi|74239585|gb|DT647499.1|DT647499
genomic: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCAACTTGAGgtatggttag ... taatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTT
EST: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCACCTTGAG GATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTTEST: gi|71422217|gb|DR805651.1|DR805651
genomic: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCAACTTGAGgtatggttag ... taatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTT
EST: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCAACTTGAG GATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTT
genomic: ATTTTGCCCTGAAATATCTGTGGGATTACATAAAAGCAAACCAACTTGAGgtatggttag ... taatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTT
aaatttatggcttaatacaccacaaatattaattgctctgtttggtaatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTTGGCTGTGAGAGCATTCCTATGTCAGGACTATCAGAAATGCTTGGTCACC
tattaat putative branch site (score: 44)
acaaatattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaagtcattttgattatgaagtgtggattcactgtgagctgtgaaatttatggcttaatacaccacaaatattaattgctctgtttggtaatgcatagGATGTCATCAACGAATCAATATTATGCGATTCAAAACTTCAAGAGCTCTTTGGCTGTGAGAGCATTCCTATGTCAGGACTATCAGAAATGCTTGGTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA