1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaacctactaccagttttctgggctgtggctgtgaggtcataacaatccaacggcctgataaaaaaatgctctctttgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCAC
species | Zea mays |
transcript | GRMZM2G124434_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCEST: gi|149075250|gb|EE163754.2|EE163754
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGC
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTEST: gi|148986030|gb|EE029877.2|EE029877
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTT
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|67022927|gb|CO451676.1|CO451676
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCANACATCCAEST: gi|50327568|gb|CO522694.1|CO522694
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|148944625|gb|EC889756.2|EC889756
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|149085930|gb|EE175457.2|EE175457
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCEST: gi|76014792|gb|DT941962.1|DT941962
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTC
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|111189030|gb|EE287166.1|EE287166
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: GCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|148943841|gb|EC888919.2|EC888919
genomic: GCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGEST: gi|67016994|gb|CO445743.1|CO445743
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTG
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|67023443|gb|CO452192.1|CO452192
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|149080013|gb|EE169034.2|EE169034
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|148943579|gb|EC888642.2|EC888642
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|71432080|gb|DR813130.1|DR813130
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: TTTCGGAACATGGAAAG GTGGCCGGGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|149004990|gb|EE039510.2|EE039510
genomic: TTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|71432081|gb|DR813131.1|DR813131
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|67025719|gb|CO454468.1|CO454468
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|31353274|gb|CD437631.1|CD437631
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|149004882|gb|EE039392.2|EE039392
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|91877152|gb|EB407109.1|EB407109
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTEST: gi|67021931|gb|CO450680.1|CO450680
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCT
EST: CTTCC-CAACATCTACGGCCCTTTCGGAACATGG-AAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|148959388|gb|EE010762.2|EE010762
genomic: CTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACCACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGEST: gi|71766426|gb|DR964363.1|DR964363
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGG
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|78110081|gb|DV528496.1|DV528496
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCCEST: gi|148940561|gb|EC885363.2|EC885363
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|148930700|gb|EC872950.2|EC872950
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACA-CATCTACGGCCCTTTCGGAACATGGGAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCEST: gi|149087879|gb|EE177150.2|EE177150
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTC
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCTAGAA-GGCTCAGACATCCEST: gi|148932049|gb|EC875384.2|EC875384
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGC-AGAAAGGCTCAGACATCC
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGATGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|31361616|gb|CD445973.1|CD445973
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|71766875|gb|DR964812.1|DR964812
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|74242204|gb|DT650118.1|DT650118
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|76017298|gb|DT944468.1|DT944468
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|71769936|gb|DR967873.1|DR967873
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|149099241|gb|EE185272.2|EE185272
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGGCGCGAGAAGGCACCGGCTGCCTTCTGCAEST: gi|31354646|gb|CD439003.1|CD439003
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|71429280|gb|DR810330.1|DR810330
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCCCCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCAEST: gi|67014813|gb|CO443562.1|CO443562
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
EST: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAG GTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
genomic: CCGCGTCGGCCGCTTCCACAACATCTACGGCCCTTTCGGAACATGGAAAGgtgaacctac ... tgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCA
gtgaggtcataacaatccaacggcctgataaaaaaatgctctctttgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCAC
ctctctttgtctatc CT-rich tract
tgataaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacctactaccagttttctgggctgtggctgtgaggtcataacaatccaacggcctgataaaaaaatgctctctttgtctatcagGTGGCCGCGAGAAGGCACCGGCTGCCTTCTGCAGAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
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