1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaagatatccacccactttctcacttctcaaagaagattgcatctttcacatatggtgaagaaaacgatattcttcttctaattgttttctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
species | Zea mays |
transcript | GRMZM2G124091_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAG AAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCCEST: gi|89253024|gb|DY624810.1|DY624810
genomic: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcct ... tctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
EST: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAG AAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCCEST: gi|101399938|gb|EB821816.1|EB821816
genomic: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcct ... tctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
EST: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAG AAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCCEST: gi|149000975|gb|EE038215.2|EE038215
genomic: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcct ... tctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
EST: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAG AAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
genomic: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcct ... tctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
ctttcacatatggtgaagaaaacgatattcttcttctaattgttttctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
ttctaat putative branch site (score: 14)
ttcttcttctaattgt CT-rich tract
taattgttttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaagatatccacccactttctcacttctcaaagaagattgcatctttcacatatggtgaagaaaacgatattcttcttctaattgttttctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-aaaagata
- - - - - ccaccca
- - - - - - - - - - - - - - - caaagaag
- - - - - - - - - - - - - - - - - - - -ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa