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gtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTAAGGGTTTTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGA
species | Zea mays |
transcript | GRMZM2G123537_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAG TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTEST: gi|18659516|gb|BM500379.1|BM500379
genomic: AGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
EST: CTGATGTTTTTGGAAACTATGTTATACAGAAG TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTEST: gi|89760634|gb|DY688966.1|DY688966
genomic: CTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
EST: AGGCACGTACTTTGATGACTGATGTTTTTGCAAACTATGTTATACAGAAG TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTEST: gi|32831881|gb|CD971559.1|CD971559
genomic: AGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
EST: TACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAG TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCATCCTTGCTT
genomic: TACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
ttgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTAAGGGTTTTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGA
tttttaaattagtgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTAAGGGTTTTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA