Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatttatcaagtgttaacacagttaactgagtgttactgcttgtggacctcatcagtgatccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT

Basic information

species Zea mays
transcript GRMZM2G122871_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32911393|gb|CF016205.1|CF016205
EST:     CTCGCTTGAAGGATGGCAACCCTCTTTTTGGGTCCTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211066069|gb|FK950657.1|FK950657
EST:     TCGCTTGAAGGATGACAACCCTCTTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTT
genomic: TCGCTTGAAGGATGACAACCCTCTTTTT-GGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTT
EST: gi|211066063|gb|FK950651.1|FK950651
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211439479|gb|FK950632.1|FK950632
EST:     CTCGCTTSAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211426487|gb|FK950553.1|FK950553
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAWCAA                         GCCCACGTTGAGCAATGGATGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGG
EST: gi|211429076|gb|FK950568.1|FK950568
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211426488|gb|FK950554.1|FK950554
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211197063|gb|FK950520.1|FK950520
EST:     CTCGCTTGAAGGAT-AGA-CG-TCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211436884|gb|FK950619.1|FK950619
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211436885|gb|FK950620.1|FK950620
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211436889|gb|FK950624.1|FK950624
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211434295|gb|FK950612.1|FK950612
EST:     TCGCTGTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: TCGCT-TGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|32844294|gb|CD983975.1|CD983975
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211429087|gb|FK950579.1|FK950579
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431686|gb|FK950589.1|FK950589
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068803|gb|FK950661.1|FK950661
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431688|gb|FK950591.1|FK950591
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCC-ACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGG
EST: gi|211068812|gb|FK950670.1|FK950670
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCC-GTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211439488|gb|FK950641.1|FK950641
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGN
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431689|gb|FK950592.1|FK950592
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGA-GTTTGATCCTGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTT-GATCCTGG
EST: gi|211068811|gb|FK950669.1|FK950669
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGC
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGC
EST: gi|211071543|gb|FK950680.1|FK950680
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTTGCCGCAACAGAAGTTGATCCTGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTT-GCCGCAACAGAAGTTGATCCTGG
EST: gi|4628217|gb|AI619091.1|AI619091
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211434287|gb|FK950604.1|FK950604
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|32845728|gb|CD985409.1|CD985409
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211421280|gb|FK950533.1|FK950533
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068800|gb|FK950658.1|FK950658
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTKCCGCAACAKAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068808|gb|FK950666.1|FK950666
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211066059|gb|FK950647.1|FK950647
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTBTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211066058|gb|FK950646.1|FK950646
EST:     CTCGCTTKAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211197057|gb|FK950514.1|FK950514
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAAT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAAT
EST: gi|211066066|gb|FK950654.1|FK950654
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211434290|gb|FK950607.1|FK950607
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211071546|gb|FK950683.1|FK950683
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211197058|gb|FK950515.1|FK950515
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211421281|gb|FK950534.1|FK950534
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068806|gb|FK950664.1|FK950664
EST:     CTCGCTC-AAGGATGACAACCCTCTTTTTGGGTCTTSCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|32914735|gb|CF019547.1|CF019547
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211421273|gb|FK950526.1|FK950526
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGGATGGATTTTGCCGCAACAGAAGTTGATCCTGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGG-ATGGATTTTGCCGCAACAGAAGTTGATCCTGG
EST: gi|211436879|gb|FK950614.1|FK950614
EST:     TCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGG
genomic: TCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTG-AACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGG
EST: gi|211071541|gb|FK950678.1|FK950678
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGT-GATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431682|gb|FK950585.1|FK950585
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAMCAGAAGTYGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211429085|gb|FK950577.1|FK950577
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTTGATCCTG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTT-GAGCAATGGATGGATTTTGCCGCAACAGAAGTT-GATCCTG
EST: gi|211421279|gb|FK950532.1|FK950532
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211429084|gb|FK950576.1|FK950576
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431692|gb|FK950595.1|FK950595
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211434286|gb|FK950603.1|FK950603
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068813|gb|FK950671.1|FK950671
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211429082|gb|FK950574.1|FK950574
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211439487|gb|FK950640.1|FK950640
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068814|gb|FK950672.1|FK950672
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211068807|gb|FK950665.1|FK950665
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211421283|gb|FK950536.1|FK950536
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211431683|gb|FK950586.1|FK950586
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGGATGGATTTTGCCGCAANAGAAGTTGATCCTGG
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGG-ATGGATTTTGCCGCAACAGAAGTTGATCCTGG
EST: gi|211066068|gb|FK950656.1|FK950656
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATCTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
EST: gi|211429077|gb|FK950569.1|FK950569
EST:     CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAA                         GCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT
genomic: CTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1733

TTGCTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1676

TTGCTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2022

TTGCTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 933

TTGCTCGCTTGAAGGATGACAACCCTCTTTTTGGGTCTTCCCGTATTGAACAAgtgagtgatt ... atccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacacagttaactgagtgttactgcttgtggacctcatcagtgatccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT
                                              tccttgc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgatttatcaagtgttaacacagttaactgagtgttactgcttgtggacctcatcagtgatccttgcagGCCCACGTTGAGCAATGGATGGATTTTGCCGCAACAGAAGTTGATCCTGGTGTTGCATGGTACTTGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT